Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.49■□□□□ 0.55
MSH3P20585 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
MSH3P20585 AL357033.4-201ENST00000617703 1807 ntBASIC18.49■□□□□ 0.55
MSH3P20585 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.49■□□□□ 0.55
MSH3P20585 MTMR9LP-203ENST00000426597 1545 ntBASIC18.49■□□□□ 0.55
MSH3P20585 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.49■□□□□ 0.55
MSH3P20585 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.49■□□□□ 0.55
MSH3P20585 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.48■□□□□ 0.55
MSH3P20585 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
MSH3P20585 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
MSH3P20585 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
MSH3P20585 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 TERF1P1-201ENST00000311003 1181 ntBASIC18.48■□□□□ 0.55
MSH3P20585 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
MSH3P20585 MIR564-202ENST00000385049 94 ntBASIC18.48■□□□□ 0.55
MSH3P20585 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.48■□□□□ 0.55
MSH3P20585 AC010203.1-204ENST00000548782 407 ntBASIC18.48■□□□□ 0.55
MSH3P20585 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.48■□□□□ 0.55
MSH3P20585 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.48■□□□□ 0.55
MSH3P20585 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
MSH3P20585 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.48■□□□□ 0.55
MSH3P20585 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
MSH3P20585 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
MSH3P20585 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH3P20585 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH3P20585 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
MSH3P20585 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH3P20585 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.47■□□□□ 0.55
MSH3P20585 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.47■□□□□ 0.55
MSH3P20585 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH3P20585 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH3P20585 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
MSH3P20585 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
MSH3P20585 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH3P20585 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH3P20585 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.47■□□□□ 0.55
MSH3P20585 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
MSH3P20585 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH3P20585 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.47■□□□□ 0.55
MSH3P20585 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
MSH3P20585 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
MSH3P20585 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
MSH3P20585 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH3P20585 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
MSH3P20585 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
MSH3P20585 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.46■□□□□ 0.55
MSH3P20585 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH3P20585 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH3P20585 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH3P20585 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH3P20585 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
MSH3P20585 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH3P20585 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH3P20585 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.46■□□□□ 0.55
MSH3P20585 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.46■□□□□ 0.55
MSH3P20585 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.46■□□□□ 0.55
MSH3P20585 AC009947.2-201ENST00000444014 672 ntBASIC18.46■□□□□ 0.55
MSH3P20585 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.46■□□□□ 0.55
MSH3P20585 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.46■□□□□ 0.55
MSH3P20585 AC141257.4-201ENST00000634557 245 ntBASIC18.46■□□□□ 0.55
MSH3P20585 AC136944.6-201ENST00000634818 245 ntBASIC18.46■□□□□ 0.55
MSH3P20585 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
MSH3P20585 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.46■□□□□ 0.55
MSH3P20585 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms