Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC19.34■□□□□ 0.69
COL6A3P12111 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A3P12111 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.33■□□□□ 0.69
COL6A3P12111 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.69
COL6A3P12111 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A3P12111 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A3P12111 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A3P12111 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A3P12111 NOP2-211ENST00000540228 668 ntTSL 2 BASIC19.33■□□□□ 0.68
COL6A3P12111 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.33■□□□□ 0.68
COL6A3P12111 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A3P12111 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A3P12111 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A3P12111 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A3P12111 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.33■□□□□ 0.68
COL6A3P12111 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A3P12111 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.33■□□□□ 0.68
COL6A3P12111 FBXW4P1-201ENST00000426721 2239 ntBASIC19.33■□□□□ 0.68
COL6A3P12111 AC097374.2-201ENST00000618617 1306 ntBASIC19.32■□□□□ 0.68
COL6A3P12111 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A3P12111 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A3P12111 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A3P12111 AL132655.2-201ENST00000596276 594 ntBASIC19.32■□□□□ 0.68
COL6A3P12111 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.32■□□□□ 0.68
COL6A3P12111 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.32■□□□□ 0.68
COL6A3P12111 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.32■□□□□ 0.68
COL6A3P12111 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL6A3P12111 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A3P12111 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC19.32■□□□□ 0.68
COL6A3P12111 AC008761.3-201ENST00000624803 892 ntBASIC19.32■□□□□ 0.68
COL6A3P12111 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A3P12111 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.32■□□□□ 0.68
COL6A3P12111 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A3P12111 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A3P12111 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A3P12111 MTDHP4-201ENST00000600287 670 ntBASIC19.32■□□□□ 0.68
COL6A3P12111 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A3P12111 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A3P12111 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A3P12111 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A3P12111 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
COL6A3P12111 ATP5G2P4-201ENST00000442175 420 ntBASIC19.31■□□□□ 0.68
COL6A3P12111 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.31■□□□□ 0.68
COL6A3P12111 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.31■□□□□ 0.68
COL6A3P12111 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
COL6A3P12111 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.31■□□□□ 0.68
COL6A3P12111 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
COL6A3P12111 GPR89P-201ENST00000407924 1495 ntBASIC19.31■□□□□ 0.68
COL6A3P12111 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A3P12111 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A3P12111 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A3P12111 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A3P12111 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL6A3P12111 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL6A3P12111 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A3P12111 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A3P12111 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A3P12111 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL6A3P12111 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
COL6A3P12111 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A3P12111 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 CR383656.12-201ENST00000549567 513 ntBASIC19.3■□□□□ 0.68
COL6A3P12111 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.3■□□□□ 0.68
COL6A3P12111 AC104390.1-201ENST00000555663 520 ntBASIC19.3■□□□□ 0.68
COL6A3P12111 AC015911.4-201ENST00000588022 1070 ntBASIC19.3■□□□□ 0.68
COL6A3P12111 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL6A3P12111 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.3■□□□□ 0.68
COL6A3P12111 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.3■□□□□ 0.68
COL6A3P12111 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A3P12111 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.3■□□□□ 0.68
COL6A3P12111 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.3■□□□□ 0.68
COL6A3P12111 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.3■□□□□ 0.68
COL6A3P12111 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC19.3■□□□□ 0.68
COL6A3P12111 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC19.3■□□□□ 0.68
COL6A3P12111 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A3P12111 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.29■□□□□ 0.68
COL6A3P12111 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.29■□□□□ 0.68
COL6A3P12111 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
COL6A3P12111 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.29■□□□□ 0.68
COL6A3P12111 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC19.29■□□□□ 0.68
COL6A3P12111 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.29■□□□□ 0.68
COL6A3P12111 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.29■□□□□ 0.68
COL6A3P12111 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
COL6A3P12111 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC19.29■□□□□ 0.68
COL6A3P12111 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.29■□□□□ 0.68
COL6A3P12111 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.29■□□□□ 0.68
COL6A3P12111 AL139288.1-201ENST00000623748 933 ntBASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms