Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 AF186192.3-201ENST00000583427 947 ntBASIC18.38■□□□□ 0.53
COL6A2P12110 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.38■□□□□ 0.53
COL6A2P12110 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A2P12110 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
COL6A2P12110 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.38■□□□□ 0.53
COL6A2P12110 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A2P12110 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
COL6A2P12110 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
COL6A2P12110 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.38■□□□□ 0.53
COL6A2P12110 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A2P12110 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.38■□□□□ 0.53
COL6A2P12110 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A2P12110 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL6A2P12110 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
COL6A2P12110 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COL6A2P12110 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A2P12110 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A2P12110 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.37■□□□□ 0.53
COL6A2P12110 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.37■□□□□ 0.53
COL6A2P12110 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.37■□□□□ 0.53
COL6A2P12110 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL6A2P12110 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.37■□□□□ 0.53
COL6A2P12110 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A2P12110 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A2P12110 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.37■□□□□ 0.53
COL6A2P12110 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.37■□□□□ 0.53
COL6A2P12110 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A2P12110 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A2P12110 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL6A2P12110 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
COL6A2P12110 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL6A2P12110 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A2P12110 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL6A2P12110 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL6A2P12110 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.36■□□□□ 0.53
COL6A2P12110 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.36■□□□□ 0.53
COL6A2P12110 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
COL6A2P12110 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.36■□□□□ 0.53
COL6A2P12110 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL6A2P12110 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 AC128676.1-201ENST00000454392 318 ntBASIC18.36■□□□□ 0.53
COL6A2P12110 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.36■□□□□ 0.53
COL6A2P12110 B3GAT3P1-201ENST00000471720 806 ntBASIC18.36■□□□□ 0.53
COL6A2P12110 AC011506.1-201ENST00000474329 610 ntBASIC18.36■□□□□ 0.53
COL6A2P12110 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
COL6A2P12110 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL6A2P12110 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
COL6A2P12110 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.36■□□□□ 0.53
COL6A2P12110 MIR6786-201ENST00000616843 113 ntBASIC18.36■□□□□ 0.53
COL6A2P12110 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
COL6A2P12110 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A2P12110 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A2P12110 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
COL6A2P12110 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A2P12110 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A2P12110 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A2P12110 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.35■□□□□ 0.53
COL6A2P12110 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A2P12110 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A2P12110 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A2P12110 FSCN1P1-201ENST00000568912 1481 ntBASIC18.35■□□□□ 0.53
COL6A2P12110 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A2P12110 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A2P12110 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A2P12110 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
COL6A2P12110 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A2P12110 MIR564-202ENST00000385049 94 ntBASIC18.35■□□□□ 0.53
COL6A2P12110 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A2P12110 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.35■□□□□ 0.53
COL6A2P12110 C1QBPP2-201ENST00000528754 825 ntBASIC18.35■□□□□ 0.53
COL6A2P12110 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A2P12110 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A2P12110 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A2P12110 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A2P12110 AP000692.2-201ENST00000608391 879 ntBASIC18.35■□□□□ 0.53
COL6A2P12110 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A2P12110 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
COL6A2P12110 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A2P12110 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A2P12110 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A2P12110 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A2P12110 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A2P12110 AC138028.4-201ENST00000564984 1845 ntBASIC18.35■□□□□ 0.53
COL6A2P12110 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A2P12110 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
COL6A2P12110 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A2P12110 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms