Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.2■□□□□ 0.82
CHRNA1P02708 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHRNA1P02708 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CHRNA1P02708 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CHRNA1P02708 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.19■□□□□ 0.82
CHRNA1P02708 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.19■□□□□ 0.82
CHRNA1P02708 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.19■□□□□ 0.82
CHRNA1P02708 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.19■□□□□ 0.82
CHRNA1P02708 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.19■□□□□ 0.82
CHRNA1P02708 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.19■□□□□ 0.82
CHRNA1P02708 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.19■□□□□ 0.82
CHRNA1P02708 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.19■□□□□ 0.82
CHRNA1P02708 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.19■□□□□ 0.82
CHRNA1P02708 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.19■□□□□ 0.82
CHRNA1P02708 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CHRNA1P02708 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CHRNA1P02708 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.19■□□□□ 0.82
CHRNA1P02708 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CHRNA1P02708 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHRNA1P02708 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
CHRNA1P02708 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CHRNA1P02708 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CHRNA1P02708 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.18■□□□□ 0.82
CHRNA1P02708 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
CHRNA1P02708 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.18■□□□□ 0.82
CHRNA1P02708 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.18■□□□□ 0.82
CHRNA1P02708 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 KRT16P4-201ENST00000453883 522 ntBASIC20.18■□□□□ 0.82
CHRNA1P02708 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.18■□□□□ 0.82
CHRNA1P02708 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.18■□□□□ 0.82
CHRNA1P02708 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.18■□□□□ 0.82
CHRNA1P02708 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.18■□□□□ 0.82
CHRNA1P02708 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
CHRNA1P02708 AL353801.3-201ENST00000609898 542 ntBASIC20.18■□□□□ 0.82
CHRNA1P02708 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.18■□□□□ 0.82
CHRNA1P02708 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.18■□□□□ 0.82
CHRNA1P02708 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CHRNA1P02708 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHRNA1P02708 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.18■□□□□ 0.82
CHRNA1P02708 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.18■□□□□ 0.82
CHRNA1P02708 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
CHRNA1P02708 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 NSUN5P1-202ENST00000421140 1535 ntBASIC20.17■□□□□ 0.82
CHRNA1P02708 NSUN5P2-203ENST00000457352 1529 ntBASIC20.17■□□□□ 0.82
CHRNA1P02708 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.17■□□□□ 0.82
CHRNA1P02708 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CHRNA1P02708 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CHRNA1P02708 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20.17■□□□□ 0.82
CHRNA1P02708 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHRNA1P02708 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.17■□□□□ 0.82
CHRNA1P02708 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms