Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 PHGDH-210ENST00000641115 1638 ntBASIC17.54■□□□□ 0.4
CLPTM1O96005 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CLPTM1O96005 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CLPTM1O96005 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
CLPTM1O96005 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.54■□□□□ 0.4
CLPTM1O96005 LSM12P1-201ENST00000411836 588 ntBASIC17.54■□□□□ 0.4
CLPTM1O96005 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.54■□□□□ 0.4
CLPTM1O96005 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.54■□□□□ 0.4
CLPTM1O96005 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.54■□□□□ 0.4
CLPTM1O96005 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.54■□□□□ 0.4
CLPTM1O96005 MIR4758-201ENST00000577688 71 ntBASIC17.54■□□□□ 0.4
CLPTM1O96005 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.54■□□□□ 0.4
CLPTM1O96005 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
CLPTM1O96005 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.54■□□□□ 0.4
CLPTM1O96005 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.54■□□□□ 0.4
CLPTM1O96005 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.54■□□□□ 0.4
CLPTM1O96005 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CLPTM1O96005 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CLPTM1O96005 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.54■□□□□ 0.4
CLPTM1O96005 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
CLPTM1O96005 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.54■□□□□ 0.4
CLPTM1O96005 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLPTM1O96005 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17.53■□□□□ 0.4
CLPTM1O96005 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.53■□□□□ 0.4
CLPTM1O96005 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.53■□□□□ 0.4
CLPTM1O96005 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CLPTM1O96005 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.53■□□□□ 0.4
CLPTM1O96005 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.53■□□□□ 0.4
CLPTM1O96005 KRT18P68-201ENST00000392293 1000 ntBASIC17.53■□□□□ 0.4
CLPTM1O96005 PGM5P4-201ENST00000421970 445 ntBASIC17.53■□□□□ 0.4
CLPTM1O96005 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.53■□□□□ 0.4
CLPTM1O96005 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.53■□□□□ 0.4
CLPTM1O96005 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.53■□□□□ 0.4
CLPTM1O96005 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CLPTM1O96005 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLPTM1O96005 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.53■□□□□ 0.4
CLPTM1O96005 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CLPTM1O96005 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CLPTM1O96005 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.52■□□□□ 0.4
CLPTM1O96005 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.52■□□□□ 0.4
CLPTM1O96005 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLPTM1O96005 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLPTM1O96005 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.52■□□□□ 0.4
CLPTM1O96005 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLPTM1O96005 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.52■□□□□ 0.4
CLPTM1O96005 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.52■□□□□ 0.4
CLPTM1O96005 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLPTM1O96005 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLPTM1O96005 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLPTM1O96005 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLPTM1O96005 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CLPTM1O96005 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLPTM1O96005 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLPTM1O96005 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CLPTM1O96005 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLPTM1O96005 AC069152.1-201ENST00000438030 544 ntBASIC17.52■□□□□ 0.4
CLPTM1O96005 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.52■□□□□ 0.4
CLPTM1O96005 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.52■□□□□ 0.4
CLPTM1O96005 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.52■□□□□ 0.4
CLPTM1O96005 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.52■□□□□ 0.4
CLPTM1O96005 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.52■□□□□ 0.4
CLPTM1O96005 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CLPTM1O96005 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms