Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 AC126763.1-201ENST00000552015 2118 ntBASIC17.47■□□□□ 0.39
LDB3O75112 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.47■□□□□ 0.39
LDB3O75112 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.47■□□□□ 0.39
LDB3O75112 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
LDB3O75112 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.47■□□□□ 0.39
LDB3O75112 KRT18P21-201ENST00000515767 1272 ntBASIC17.47■□□□□ 0.39
LDB3O75112 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.47■□□□□ 0.39
LDB3O75112 RN7SL850P-201ENST00000579959 291 ntBASIC17.47■□□□□ 0.39
LDB3O75112 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.47■□□□□ 0.39
LDB3O75112 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.47■□□□□ 0.39
LDB3O75112 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.47■□□□□ 0.39
LDB3O75112 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.47■□□□□ 0.39
LDB3O75112 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
LDB3O75112 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.47■□□□□ 0.39
LDB3O75112 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.47■□□□□ 0.39
LDB3O75112 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.47■□□□□ 0.39
LDB3O75112 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDB3O75112 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
LDB3O75112 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.46■□□□□ 0.39
LDB3O75112 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LDB3O75112 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDB3O75112 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDB3O75112 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDB3O75112 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.46■□□□□ 0.39
LDB3O75112 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.46■□□□□ 0.39
LDB3O75112 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.46■□□□□ 0.39
LDB3O75112 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
LDB3O75112 AC024243.1-201ENST00000609234 778 ntBASIC17.46■□□□□ 0.39
LDB3O75112 AL023973.1-201ENST00000624619 620 ntBASIC17.46■□□□□ 0.39
LDB3O75112 AC112497.1-201ENST00000624824 639 ntBASIC17.46■□□□□ 0.39
LDB3O75112 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.46■□□□□ 0.39
LDB3O75112 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.46■□□□□ 0.39
LDB3O75112 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.46■□□□□ 0.39
LDB3O75112 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDB3O75112 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDB3O75112 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LDB3O75112 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LDB3O75112 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.46■□□□□ 0.39
LDB3O75112 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.46■□□□□ 0.39
LDB3O75112 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
LDB3O75112 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.46■□□□□ 0.39
LDB3O75112 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.46■□□□□ 0.38
LDB3O75112 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.46■□□□□ 0.38
LDB3O75112 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
LDB3O75112 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDB3O75112 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.45■□□□□ 0.38
LDB3O75112 AL138781.2-201ENST00000617896 1843 ntBASIC17.45■□□□□ 0.38
LDB3O75112 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDB3O75112 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LDB3O75112 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDB3O75112 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LDB3O75112 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.45■□□□□ 0.38
LDB3O75112 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.45■□□□□ 0.38
LDB3O75112 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.45■□□□□ 0.38
LDB3O75112 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
LDB3O75112 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.45■□□□□ 0.38
LDB3O75112 NEK4P2-201ENST00000580004 1012 ntBASIC17.45■□□□□ 0.38
LDB3O75112 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LDB3O75112 AC092865.7-201ENST00000641832 219 ntBASIC17.45■□□□□ 0.38
LDB3O75112 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.45■□□□□ 0.38
LDB3O75112 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDB3O75112 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDB3O75112 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LDB3O75112 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LDB3O75112 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
LDB3O75112 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
LDB3O75112 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
LDB3O75112 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.44■□□□□ 0.38
LDB3O75112 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.44■□□□□ 0.38
LDB3O75112 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDB3O75112 AC104581.1-202ENST00000635932 2618 ntBASIC17.44■□□□□ 0.38
LDB3O75112 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.44■□□□□ 0.38
LDB3O75112 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.44■□□□□ 0.38
LDB3O75112 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms