Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.3■□□□□ 0.84
CLDN3O15551 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CLDN3O15551 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.3■□□□□ 0.84
CLDN3O15551 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.3■□□□□ 0.84
CLDN3O15551 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
CLDN3O15551 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CLDN3O15551 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.3■□□□□ 0.84
CLDN3O15551 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CLDN3O15551 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLDN3O15551 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.3■□□□□ 0.84
CLDN3O15551 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.3■□□□□ 0.84
CLDN3O15551 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CLDN3O15551 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.29■□□□□ 0.84
CLDN3O15551 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLDN3O15551 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLDN3O15551 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLDN3O15551 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLDN3O15551 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLDN3O15551 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CLDN3O15551 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLDN3O15551 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.29■□□□□ 0.84
CLDN3O15551 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLDN3O15551 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CLDN3O15551 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLDN3O15551 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.29■□□□□ 0.84
CLDN3O15551 NTF6B-201ENST00000591913 560 ntBASIC20.29■□□□□ 0.84
CLDN3O15551 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.29■□□□□ 0.84
CLDN3O15551 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CLDN3O15551 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLDN3O15551 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CLDN3O15551 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.29■□□□□ 0.84
CLDN3O15551 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLDN3O15551 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.29■□□□□ 0.84
CLDN3O15551 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLDN3O15551 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.29■□□□□ 0.84
CLDN3O15551 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CLDN3O15551 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLDN3O15551 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
CLDN3O15551 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
CLDN3O15551 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.28■□□□□ 0.84
CLDN3O15551 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.28■□□□□ 0.84
CLDN3O15551 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.28■□□□□ 0.84
CLDN3O15551 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CLDN3O15551 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 STARP1-201ENST00000397973 869 ntBASIC20.28■□□□□ 0.84
CLDN3O15551 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.28■□□□□ 0.84
CLDN3O15551 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.28■□□□□ 0.84
CLDN3O15551 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.28■□□□□ 0.84
CLDN3O15551 AL359075.1-203ENST00000462729 1002 ntBASIC20.28■□□□□ 0.84
CLDN3O15551 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.28■□□□□ 0.84
CLDN3O15551 AC034232.1-201ENST00000506026 1064 ntBASIC20.28■□□□□ 0.84
CLDN3O15551 AC104390.1-201ENST00000555663 520 ntBASIC20.28■□□□□ 0.84
CLDN3O15551 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.28■□□□□ 0.84
CLDN3O15551 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.28■□□□□ 0.84
CLDN3O15551 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLDN3O15551 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CLDN3O15551 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.27■□□□□ 0.84
CLDN3O15551 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN3O15551 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN3O15551 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN3O15551 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN3O15551 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.27■□□□□ 0.84
CLDN3O15551 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN3O15551 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN3O15551 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.27■□□□□ 0.84
CLDN3O15551 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN3O15551 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.27■□□□□ 0.84
CLDN3O15551 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN3O15551 KRT18P35-201ENST00000510488 1269 ntBASIC20.27■□□□□ 0.84
CLDN3O15551 KRT18P41-201ENST00000518924 1277 ntBASIC20.27■□□□□ 0.84
CLDN3O15551 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.27■□□□□ 0.84
CLDN3O15551 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CLDN3O15551 AL445228.2-201ENST00000605589 952 ntBASIC20.27■□□□□ 0.84
CLDN3O15551 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN3O15551 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms