Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS9D1Q9Y2B5 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.56
VPS9D1Q9Y2B5 AC034236.2-201ENST00000606662 1610 ntBASIC18.52■□□□□ 0.55
VPS9D1Q9Y2B5 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS9D1Q9Y2B5 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS9D1Q9Y2B5 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
VPS9D1Q9Y2B5 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS9D1Q9Y2B5 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS9D1Q9Y2B5 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 SNORA78-201ENST00000459373 127 ntBASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
VPS9D1Q9Y2B5 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 AC009113.1-201ENST00000570267 2443 ntBASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 AL353719.1-201ENST00000566847 864 ntBASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 AC116562.4-202ENST00000641738 218 ntBASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 AC126763.1-201ENST00000552015 2118 ntBASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 AL162741.1-201ENST00000565563 1558 ntBASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
VPS9D1Q9Y2B5 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 BX088651.1-201ENST00000540551 451 ntBASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 MIR4497-201ENST00000583208 89 ntBASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 AP000525.1-201ENST00000608286 694 ntBASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 AL023803.3-201ENST00000615559 522 ntBASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms