Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 AL391807.1-203ENST00000604392 2365 ntBASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 AC069148.1-201ENST00000608741 768 ntBASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.54■□□□□ 0.24
CLCF1Q9UBD9 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 PTGES2-AS1-201ENST00000443493 2100 ntBASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC16.53■□□□□ 0.24
CLCF1Q9UBD9 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLCF1Q9UBD9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLCF1Q9UBD9 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLCF1Q9UBD9 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLCF1Q9UBD9 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.52■□□□□ 0.24
CLCF1Q9UBD9 KRT18P41-201ENST00000518924 1277 ntBASIC16.52■□□□□ 0.24
CLCF1Q9UBD9 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.52■□□□□ 0.24
CLCF1Q9UBD9 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.52■□□□□ 0.24
CLCF1Q9UBD9 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.52■□□□□ 0.24
CLCF1Q9UBD9 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.52■□□□□ 0.24
CLCF1Q9UBD9 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.52■□□□□ 0.24
CLCF1Q9UBD9 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC16.52■□□□□ 0.24
CLCF1Q9UBD9 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLCF1Q9UBD9 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLCF1Q9UBD9 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLCF1Q9UBD9 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLCF1Q9UBD9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLCF1Q9UBD9 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CLCF1Q9UBD9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.52■□□□□ 0.23
CLCF1Q9UBD9 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CLCF1Q9UBD9 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLCF1Q9UBD9 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC16.52■□□□□ 0.23
CLCF1Q9UBD9 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 HCG11-201ENST00000411553 5696 ntBASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLCF1Q9UBD9 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms