Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 GCSHP5-201ENST00000443090 522 ntBASIC19■□□□□ 0.63
TRIM56Q9BRZ2 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 AC131212.4-201ENST00000623606 975 ntBASIC19■□□□□ 0.63
TRIM56Q9BRZ2 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19■□□□□ 0.63
TRIM56Q9BRZ2 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 PKD1P1-201ENST00000458669 6805 ntBASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 CR392000.1-201ENST00000624770 1228 ntBASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM56Q9BRZ2 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 AC011506.1-201ENST00000474329 610 ntBASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 AL353708.3-201ENST00000610272 989 ntBASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 AL359736.2-201ENST00000621992 437 ntBASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 AC068587.9-201ENST00000641814 219 ntBASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM56Q9BRZ2 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 KSR1P1-201ENST00000446298 240 ntBASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 AF186192.3-201ENST00000583427 947 ntBASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM56Q9BRZ2 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms