Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 POM121L13P-201ENST00000422362 380 ntBASIC16.25■□□□□ 0.19
NKX3-1Q99801 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 C1QL1P1-201ENST00000568105 661 ntBASIC16.25■□□□□ 0.19
NKX3-1Q99801 AC006058.3-201ENST00000606217 1069 ntBASIC16.25■□□□□ 0.19
NKX3-1Q99801 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 AC106820.2-201ENST00000563775 3264 ntBASIC16.25■□□□□ 0.19
NKX3-1Q99801 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.25■□□□□ 0.19
NKX3-1Q99801 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NKX3-1Q99801 KRT8P41-201ENST00000533985 1514 ntBASIC16.24■□□□□ 0.19
NKX3-1Q99801 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 AC079598.2-202ENST00000546624 1451 ntBASIC16.24■□□□□ 0.19
NKX3-1Q99801 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.24■□□□□ 0.19
NKX3-1Q99801 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
NKX3-1Q99801 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
NKX3-1Q99801 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.24■□□□□ 0.19
NKX3-1Q99801 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.24■□□□□ 0.19
NKX3-1Q99801 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
NKX3-1Q99801 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 AC008403.3-201ENST00000598924 454 ntBASIC16.24■□□□□ 0.19
NKX3-1Q99801 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
NKX3-1Q99801 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
NKX3-1Q99801 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.24■□□□□ 0.19
NKX3-1Q99801 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NKX3-1Q99801 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 TSPY21P-201ENST00000433481 731 ntBASIC16.23■□□□□ 0.19
NKX3-1Q99801 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 ITM2C-210ENST00000620962 501 ntBASIC16.23■□□□□ 0.19
NKX3-1Q99801 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NKX3-1Q99801 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
NKX3-1Q99801 AC099343.3-201ENST00000605834 2503 ntBASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms