Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC24.26■■□□□ 1.47
RTF1Q92541 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC24.26■■□□□ 1.47
RTF1Q92541 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RTF1Q92541 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC24.26■■□□□ 1.47
RTF1Q92541 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RTF1Q92541 AL162741.1-201ENST00000565563 1558 ntBASIC24.26■■□□□ 1.47
RTF1Q92541 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC24.26■■□□□ 1.47
RTF1Q92541 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
RTF1Q92541 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
RTF1Q92541 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC24.26■■□□□ 1.47
RTF1Q92541 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
RTF1Q92541 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC24.26■■□□□ 1.47
RTF1Q92541 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RTF1Q92541 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
RTF1Q92541 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RTF1Q92541 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC24.26■■□□□ 1.47
RTF1Q92541 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
RTF1Q92541 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC24.26■■□□□ 1.47
RTF1Q92541 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
RTF1Q92541 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC24.25■■□□□ 1.47
RTF1Q92541 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RTF1Q92541 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
RTF1Q92541 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
RTF1Q92541 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC24.25■■□□□ 1.47
RTF1Q92541 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
RTF1Q92541 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RTF1Q92541 MIR662-201ENST00000384847 95 ntBASIC24.25■■□□□ 1.47
RTF1Q92541 PVRIG2P-201ENST00000435460 978 ntBASIC24.25■■□□□ 1.47
RTF1Q92541 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
RTF1Q92541 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
RTF1Q92541 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RTF1Q92541 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RTF1Q92541 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RTF1Q92541 KRT8P50-201ENST00000562022 1438 ntBASIC24.25■■□□□ 1.47
RTF1Q92541 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RTF1Q92541 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RTF1Q92541 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC24.25■■□□□ 1.47
RTF1Q92541 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RTF1Q92541 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RTF1Q92541 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC24.24■■□□□ 1.47
RTF1Q92541 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 KRT18P56-201ENST00000507275 550 ntBASIC24.24■■□□□ 1.47
RTF1Q92541 AC009065.1-201ENST00000564055 1225 ntBASIC24.24■■□□□ 1.47
RTF1Q92541 NAA38-203ENST00000575071 553 ntTSL 2 BASIC24.24■■□□□ 1.47
RTF1Q92541 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
RTF1Q92541 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC24.24■■□□□ 1.47
RTF1Q92541 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 PBK-203ENST00000522944 1499 ntTSL 2 BASIC24.24■■□□□ 1.47
RTF1Q92541 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC24.24■■□□□ 1.47
RTF1Q92541 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC24.24■■□□□ 1.47
RTF1Q92541 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
RTF1Q92541 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
RTF1Q92541 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC24.23■■□□□ 1.47
RTF1Q92541 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC24.23■■□□□ 1.47
RTF1Q92541 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
RTF1Q92541 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC24.23■■□□□ 1.47
RTF1Q92541 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC24.23■■□□□ 1.47
RTF1Q92541 KRT18P41-201ENST00000518924 1277 ntBASIC24.23■■□□□ 1.47
RTF1Q92541 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC24.23■■□□□ 1.47
RTF1Q92541 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC24.23■■□□□ 1.47
RTF1Q92541 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC24.23■■□□□ 1.47
RTF1Q92541 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
RTF1Q92541 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC24.23■■□□□ 1.47
RTF1Q92541 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RTF1Q92541 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
RTF1Q92541 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
RTF1Q92541 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC24.22■■□□□ 1.47
RTF1Q92541 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
RTF1Q92541 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RTF1Q92541 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RTF1Q92541 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RTF1Q92541 AP000593.1-201ENST00000393668 712 ntBASIC24.22■■□□□ 1.47
RTF1Q92541 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC24.22■■□□□ 1.47
RTF1Q92541 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC24.22■■□□□ 1.47
RTF1Q92541 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC24.22■■□□□ 1.47
RTF1Q92541 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC24.22■■□□□ 1.47
RTF1Q92541 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms