Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 AC005332.3-201ENST00000589904 676 ntBASIC18.13■□□□□ 0.49
LMX1AQ8TE12 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 AC093484.2-201ENST00000580996 2166 ntBASIC18.13■□□□□ 0.49
LMX1AQ8TE12 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 LINC00265-3P-201ENST00000447588 903 ntBASIC18.12■□□□□ 0.49
LMX1AQ8TE12 MIR3180-4-201ENST00000582223 153 ntBASIC18.12■□□□□ 0.49
LMX1AQ8TE12 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.12■□□□□ 0.49
LMX1AQ8TE12 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 AP000867.3-201ENST00000524675 377 ntBASIC18.11■□□□□ 0.49
LMX1AQ8TE12 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 Z98044.1-201ENST00000632503 1764 ntBASIC18.11■□□□□ 0.49
LMX1AQ8TE12 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1AQ8TE12 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms