Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 RAB17-203ENST00000409576 466 ntTSL 3 BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 PNKD-204ENST00000436005 978 ntTSL 5 BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 PUDP-206ENST00000540122 825 ntTSL 2 BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 AC104417.2-201ENST00000562989 1793 ntBASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 TP73-AS1-210ENST00000637775 1455 ntBASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 PTMS-202ENST00000389462 773 ntTSL 2 BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 BID-212ENST00000614949 1988 ntTSL 5 BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SMC1BQ8NDV3 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
SMC1BQ8NDV3 FBXW4P1-201ENST00000426721 2239 ntBASIC22.02■■□□□ 1.11
SMC1BQ8NDV3 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 AL109659.2-201ENST00000606809 1674 ntBASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 MCCD1P2-201ENST00000423228 335 ntBASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 MIR4469-201ENST00000583919 79 ntBASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 AC005336.2-201ENST00000593183 939 ntBASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 AL137060.1-201ENST00000618151 2648 ntBASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
SMC1BQ8NDV3 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
SMC1BQ8NDV3 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SMC1BQ8NDV3 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
SMC1BQ8NDV3 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC22■■□□□ 1.11
SMC1BQ8NDV3 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
SMC1BQ8NDV3 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC22■■□□□ 1.11
SMC1BQ8NDV3 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC22■■□□□ 1.11
SMC1BQ8NDV3 CNN2P11-201ENST00000429351 262 ntBASIC22■■□□□ 1.11
SMC1BQ8NDV3 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC22■■□□□ 1.11
SMC1BQ8NDV3 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC22■■□□□ 1.11
SMC1BQ8NDV3 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC22■■□□□ 1.11
SMC1BQ8NDV3 AC105339.3-201ENST00000560043 636 ntBASIC22■■□□□ 1.11
SMC1BQ8NDV3 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms