Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 LINC00896-202ENST00000609602 2128 ntBASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 C2orf69P4-201ENST00000565394 541 ntBASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 AC134043.2-201ENST00000624206 2238 ntBASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF540Q8NDQ6 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 AC092368.3-202ENST00000574180 1591 ntBASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 GNAS-203ENST00000306120 1878 ntBASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 AL158047.1-201ENST00000445918 881 ntBASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.23■□□□□ 0.35
ZNF540Q8NDQ6 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 AC098590.1-201ENST00000468126 897 ntBASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 UNC93B4-201ENST00000505679 747 ntBASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms