Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 AP000525.1-201ENST00000608286 694 ntBASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 UNC93B2-201ENST00000285383 730 ntBASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 MIR4785-201ENST00000585005 73 ntBASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 AC020763.4-201ENST00000623414 4170 ntBASIC18.48■□□□□ 0.55
ZNF549Q6P9A3 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 MIR564-202ENST00000385049 94 ntBASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 AL390955.1-201ENST00000428694 934 ntBASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 TSPY15P-201ENST00000457163 923 ntBASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 AL355075.4-201ENST00000554988 638 ntBASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 AL023803.3-201ENST00000615559 522 ntBASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 AP006294.2-201ENST00000641667 209 ntBASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 AL354751.1-201ENST00000412768 1863 ntBASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 AC112777.1-201ENST00000540175 1423 ntBASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.47■□□□□ 0.55
ZNF549Q6P9A3 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF549Q6P9A3 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms