Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 AC073592.3-201ENST00000625118 1834 ntBASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 AL023875.1-201ENST00000640777 796 ntBASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
PPP4R4Q6NUP7 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.84■□□□□ 0.45
PPP4R4Q6NUP7 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 AC018553.1-201ENST00000616682 1458 ntBASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.45
PPP4R4Q6NUP7 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 AC098590.1-201ENST00000468126 897 ntBASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.83■□□□□ 0.44
PPP4R4Q6NUP7 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms