Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP39Q53GS9 Z82202.1-201ENST00000623446 1880 ntBASIC18.89■□□□□ 0.61
USP39Q53GS9 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP39Q53GS9 AL023284.2-201ENST00000405850 579 ntBASIC18.89■□□□□ 0.61
USP39Q53GS9 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.89■□□□□ 0.61
USP39Q53GS9 MCCD1P1-208ENST00000445732 328 ntBASIC18.89■□□□□ 0.61
USP39Q53GS9 KRT17P6-201ENST00000453795 1220 ntBASIC18.89■□□□□ 0.61
USP39Q53GS9 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.89■□□□□ 0.61
USP39Q53GS9 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.89■□□□□ 0.61
USP39Q53GS9 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.89■□□□□ 0.61
USP39Q53GS9 MIR3180-5-201ENST00000583743 153 ntBASIC18.89■□□□□ 0.61
USP39Q53GS9 AP002414.4-201ENST00000589764 1148 ntBASIC18.89■□□□□ 0.61
USP39Q53GS9 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.89■□□□□ 0.61
USP39Q53GS9 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.89■□□□□ 0.61
USP39Q53GS9 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
USP39Q53GS9 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.89■□□□□ 0.61
USP39Q53GS9 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP39Q53GS9 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP39Q53GS9 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP39Q53GS9 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
USP39Q53GS9 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP39Q53GS9 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP39Q53GS9 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP39Q53GS9 AL162741.1-201ENST00000565563 1558 ntBASIC18.89■□□□□ 0.61
USP39Q53GS9 HCG11-201ENST00000411553 5696 ntBASIC18.89■□□□□ 0.61
USP39Q53GS9 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP39Q53GS9 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP39Q53GS9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
USP39Q53GS9 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
USP39Q53GS9 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.88■□□□□ 0.61
USP39Q53GS9 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.88■□□□□ 0.61
USP39Q53GS9 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.88■□□□□ 0.61
USP39Q53GS9 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
USP39Q53GS9 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
USP39Q53GS9 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP39Q53GS9 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP39Q53GS9 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP39Q53GS9 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP39Q53GS9 CHCHD2P8-201ENST00000429873 447 ntBASIC18.88■□□□□ 0.61
USP39Q53GS9 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
USP39Q53GS9 AP002383.4-201ENST00000442518 975 ntBASIC18.88■□□□□ 0.61
USP39Q53GS9 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.88■□□□□ 0.61
USP39Q53GS9 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
USP39Q53GS9 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.88■□□□□ 0.61
USP39Q53GS9 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.88■□□□□ 0.61
USP39Q53GS9 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
USP39Q53GS9 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP39Q53GS9 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.88■□□□□ 0.61
USP39Q53GS9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.88■□□□□ 0.61
USP39Q53GS9 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP39Q53GS9 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP39Q53GS9 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP39Q53GS9 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP39Q53GS9 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.88■□□□□ 0.61
USP39Q53GS9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.88■□□□□ 0.61
USP39Q53GS9 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.88■□□□□ 0.61
USP39Q53GS9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP39Q53GS9 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP39Q53GS9 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.87■□□□□ 0.61
USP39Q53GS9 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.87■□□□□ 0.61
USP39Q53GS9 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
USP39Q53GS9 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
USP39Q53GS9 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.87■□□□□ 0.61
USP39Q53GS9 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP39Q53GS9 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.87■□□□□ 0.61
USP39Q53GS9 KRT8P10-201ENST00000450021 1447 ntBASIC18.87■□□□□ 0.61
USP39Q53GS9 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
USP39Q53GS9 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.87■□□□□ 0.61
USP39Q53GS9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
USP39Q53GS9 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.87■□□□□ 0.61
USP39Q53GS9 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP39Q53GS9 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.87■□□□□ 0.61
USP39Q53GS9 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.87■□□□□ 0.61
USP39Q53GS9 AC093525.10-201ENST00000625130 1569 ntBASIC18.87■□□□□ 0.61
USP39Q53GS9 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP39Q53GS9 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
USP39Q53GS9 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP39Q53GS9 AP000974.1-201ENST00000623909 2387 ntBASIC18.86■□□□□ 0.61
USP39Q53GS9 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.86■□□□□ 0.61
USP39Q53GS9 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 KRT18P1-202ENST00000452408 1331 ntBASIC18.86■□□□□ 0.61
USP39Q53GS9 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 UNC93B7-201ENST00000509439 705 ntBASIC18.86■□□□□ 0.61
USP39Q53GS9 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.86■□□□□ 0.61
USP39Q53GS9 LINC01711-201ENST00000598340 967 ntBASIC18.86■□□□□ 0.61
USP39Q53GS9 AC112497.1-201ENST00000624824 639 ntBASIC18.86■□□□□ 0.61
USP39Q53GS9 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.86■□□□□ 0.61
USP39Q53GS9 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms