Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.65■□□□□ 0.26
CCDC58Q4VC31 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 AC026271.2-201ENST00000428091 497 ntBASIC16.65■□□□□ 0.26
CCDC58Q4VC31 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 REXO2-208ENST00000539754 791 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 AC120498.8-201ENST00000614275 531 ntBASIC16.65■□□□□ 0.26
CCDC58Q4VC31 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CCDC58Q4VC31 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 AC080038.1-201ENST00000611274 1154 ntBASIC16.64■□□□□ 0.25
CCDC58Q4VC31 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 AC073111.5-205ENST00000641717 521 ntBASIC16.64■□□□□ 0.25
CCDC58Q4VC31 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 HEIH-201ENST00000623091 1652 ntBASIC16.64■□□□□ 0.25
CCDC58Q4VC31 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC58Q4VC31 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 AL162727.3-201ENST00000635661 2787 ntBASIC16.63■□□□□ 0.25
CCDC58Q4VC31 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 AC022517.1-201ENST00000592429 346 ntBASIC16.63■□□□□ 0.25
CCDC58Q4VC31 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC58Q4VC31 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC58Q4VC31 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms