Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 SLC25A1P1-201ENST00000528351 927 ntBASIC17.87■□□□□ 0.45
COL28A1Q2UY09 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.87■□□□□ 0.45
COL28A1Q2UY09 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 AIRN-201ENST00000601203 4374 ntBASIC17.86■□□□□ 0.45
COL28A1Q2UY09 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 AC034232.1-201ENST00000506026 1064 ntBASIC17.86■□□□□ 0.45
COL28A1Q2UY09 TPSP2-201ENST00000561760 610 ntBASIC17.86■□□□□ 0.45
COL28A1Q2UY09 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.86■□□□□ 0.45
COL28A1Q2UY09 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 BX842568.4-201ENST00000421222 227 ntBASIC17.85■□□□□ 0.45
COL28A1Q2UY09 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 POLD2P1-201ENST00000511220 997 ntBASIC17.85■□□□□ 0.45
COL28A1Q2UY09 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL28A1Q2UY09 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms