Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
H3F3AP84243 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.63■□□□□ 0.25
H3F3AP84243 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
H3F3AP84243 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
H3F3AP84243 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
H3F3AP84243 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.63■□□□□ 0.25
H3F3AP84243 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
H3F3AP84243 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
H3F3AP84243 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
H3F3AP84243 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.62■□□□□ 0.25
H3F3AP84243 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
H3F3AP84243 AP000593.1-201ENST00000393668 712 ntBASIC16.62■□□□□ 0.25
H3F3AP84243 LIN28AP1-201ENST00000429574 405 ntBASIC16.62■□□□□ 0.25
H3F3AP84243 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.62■□□□□ 0.25
H3F3AP84243 AC009947.2-201ENST00000444014 672 ntBASIC16.62■□□□□ 0.25
H3F3AP84243 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.62■□□□□ 0.25
H3F3AP84243 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.62■□□□□ 0.25
H3F3AP84243 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.62■□□□□ 0.25
H3F3AP84243 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.62■□□□□ 0.25
H3F3AP84243 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.62■□□□□ 0.25
H3F3AP84243 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
H3F3AP84243 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.62■□□□□ 0.25
H3F3AP84243 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
H3F3AP84243 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.62■□□□□ 0.25
H3F3AP84243 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.62■□□□□ 0.25
H3F3AP84243 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
H3F3AP84243 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.61■□□□□ 0.25
H3F3AP84243 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
H3F3AP84243 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
H3F3AP84243 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.61■□□□□ 0.25
H3F3AP84243 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 AC005521.1-201ENST00000393351 872 ntBASIC16.61■□□□□ 0.25
H3F3AP84243 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
H3F3AP84243 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.61■□□□□ 0.25
H3F3AP84243 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
H3F3AP84243 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
H3F3AP84243 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.61■□□□□ 0.25
H3F3AP84243 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.61■□□□□ 0.25
H3F3AP84243 KRT8P50-201ENST00000562022 1438 ntBASIC16.61■□□□□ 0.25
H3F3AP84243 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.61■□□□□ 0.25
H3F3AP84243 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
H3F3AP84243 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
H3F3AP84243 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.6■□□□□ 0.25
H3F3AP84243 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
H3F3AP84243 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.6■□□□□ 0.25
H3F3AP84243 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
H3F3AP84243 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.6■□□□□ 0.25
H3F3AP84243 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.6■□□□□ 0.25
H3F3AP84243 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
H3F3AP84243 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
H3F3AP84243 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.6■□□□□ 0.25
H3F3AP84243 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
H3F3AP84243 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.6■□□□□ 0.25
H3F3AP84243 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.6■□□□□ 0.25
H3F3AP84243 AP000523.1-201ENST00000398242 1049 ntBASIC16.6■□□□□ 0.25
H3F3AP84243 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
H3F3AP84243 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms