Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC13.43□□□□□ -0.26
PRKDCP78527 AQP6-205ENST00000618286 829 ntTSL 5 BASIC13.43□□□□□ -0.26
PRKDCP78527 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
PRKDCP78527 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
PRKDCP78527 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 AL109659.2-201ENST00000606809 1674 ntBASIC13.43□□□□□ -0.26
PRKDCP78527 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC13.42□□□□□ -0.26
PRKDCP78527 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
PRKDCP78527 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
PRKDCP78527 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
PRKDCP78527 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 AC099343.3-201ENST00000605834 2503 ntBASIC13.42□□□□□ -0.26
PRKDCP78527 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC13.42□□□□□ -0.26
PRKDCP78527 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13.42□□□□□ -0.26
PRKDCP78527 PDPK2P-202ENST00000562415 1191 ntBASIC13.42□□□□□ -0.26
PRKDCP78527 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC13.42□□□□□ -0.26
PRKDCP78527 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
PRKDCP78527 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC13.42□□□□□ -0.26
PRKDCP78527 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC13.42□□□□□ -0.26
PRKDCP78527 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 AL391422.3-201ENST00000603791 2761 ntBASIC13.42□□□□□ -0.26
PRKDCP78527 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 AC002472.2-201ENST00000442739 958 ntBASIC13.42□□□□□ -0.26
PRKDCP78527 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC13.42□□□□□ -0.26
PRKDCP78527 MIR3180-4-201ENST00000582223 153 ntBASIC13.42□□□□□ -0.26
PRKDCP78527 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
PRKDCP78527 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC13.42□□□□□ -0.26
PRKDCP78527 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
PRKDCP78527 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
PRKDCP78527 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC13.41□□□□□ -0.26
PRKDCP78527 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC13.41□□□□□ -0.26
PRKDCP78527 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC13.41□□□□□ -0.26
PRKDCP78527 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
PRKDCP78527 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC13.41□□□□□ -0.26
PRKDCP78527 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 MIR661-201ENST00000384842 89 ntBASIC13.41□□□□□ -0.26
PRKDCP78527 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC13.41□□□□□ -0.26
PRKDCP78527 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
PRKDCP78527 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
PRKDCP78527 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
PRKDCP78527 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
PRKDCP78527 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
PRKDCP78527 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC13.41□□□□□ -0.26
PRKDCP78527 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC13.41□□□□□ -0.26
PRKDCP78527 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 RPS29-206ENST00000557111 488 ntTSL 2 BASIC13.41□□□□□ -0.26
PRKDCP78527 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 AC107918.4-202ENST00000641623 219 ntBASIC13.41□□□□□ -0.26
PRKDCP78527 AC063926.2-201ENST00000623766 1308 ntBASIC13.41□□□□□ -0.26
PRKDCP78527 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC13.41□□□□□ -0.26
PRKDCP78527 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
PRKDCP78527 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC13.41□□□□□ -0.26
PRKDCP78527 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC13.41□□□□□ -0.26
PRKDCP78527 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 AC245100.3-201ENST00000441281 285 ntBASIC13.4□□□□□ -0.26
PRKDCP78527 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC13.4□□□□□ -0.26
PRKDCP78527 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 LSR-203ENST00000360798 1963 ntTSL 2 BASIC13.4□□□□□ -0.26
PRKDCP78527 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
PRKDCP78527 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
PRKDCP78527 PUS1-205ENST00000535067 838 ntTSL 3 BASIC13.4□□□□□ -0.26
PRKDCP78527 COX5A-204ENST00000567270 579 ntTSL 3 BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms