Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
TPM4P67936 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TPM4P67936 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.87■□□□□ 0.93
TPM4P67936 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
TPM4P67936 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.87■□□□□ 0.93
TPM4P67936 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
TPM4P67936 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.87■□□□□ 0.93
TPM4P67936 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
TPM4P67936 PRKY-204ENST00000533551 1019 ntBASIC20.87■□□□□ 0.93
TPM4P67936 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.87■□□□□ 0.93
TPM4P67936 AC008687.6-201ENST00000596318 630 ntBASIC20.87■□□□□ 0.93
TPM4P67936 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.87■□□□□ 0.93
TPM4P67936 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.87■□□□□ 0.93
TPM4P67936 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.87■□□□□ 0.93
TPM4P67936 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TPM4P67936 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TPM4P67936 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
TPM4P67936 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TPM4P67936 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TPM4P67936 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
TPM4P67936 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.86■□□□□ 0.93
TPM4P67936 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
TPM4P67936 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.86■□□□□ 0.93
TPM4P67936 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TPM4P67936 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.86■□□□□ 0.93
TPM4P67936 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TPM4P67936 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TPM4P67936 AC083906.2-201ENST00000511578 360 ntBASIC20.86■□□□□ 0.93
TPM4P67936 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TPM4P67936 SOX15-203ENST00000570788 1093 ntBASIC20.86■□□□□ 0.93
TPM4P67936 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.86■□□□□ 0.93
TPM4P67936 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.86■□□□□ 0.93
TPM4P67936 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
TPM4P67936 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.86■□□□□ 0.93
TPM4P67936 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TPM4P67936 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.86■□□□□ 0.93
TPM4P67936 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.86■□□□□ 0.93
TPM4P67936 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.86■□□□□ 0.93
TPM4P67936 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.86■□□□□ 0.93
TPM4P67936 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
TPM4P67936 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TPM4P67936 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TPM4P67936 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TPM4P67936 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.86■□□□□ 0.93
TPM4P67936 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TPM4P67936 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TPM4P67936 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TPM4P67936 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TPM4P67936 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.85■□□□□ 0.93
TPM4P67936 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.85■□□□□ 0.93
TPM4P67936 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TPM4P67936 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
TPM4P67936 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TPM4P67936 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TPM4P67936 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.85■□□□□ 0.93
TPM4P67936 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.85■□□□□ 0.93
TPM4P67936 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
TPM4P67936 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.85■□□□□ 0.93
TPM4P67936 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.85■□□□□ 0.93
TPM4P67936 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.85■□□□□ 0.93
TPM4P67936 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TPM4P67936 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.85■□□□□ 0.93
TPM4P67936 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TPM4P67936 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.85■□□□□ 0.93
TPM4P67936 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.85■□□□□ 0.93
TPM4P67936 AC112777.1-201ENST00000540175 1423 ntBASIC20.85■□□□□ 0.93
TPM4P67936 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TPM4P67936 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TPM4P67936 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.85■□□□□ 0.93
TPM4P67936 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.85■□□□□ 0.93
TPM4P67936 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
TPM4P67936 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
TPM4P67936 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.84■□□□□ 0.93
TPM4P67936 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TPM4P67936 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
TPM4P67936 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TPM4P67936 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
TPM4P67936 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
TPM4P67936 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TPM4P67936 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.84■□□□□ 0.93
TPM4P67936 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms