Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
YBX1P67809 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.16■□□□□ 0.5
YBX1P67809 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
YBX1P67809 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
YBX1P67809 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
YBX1P67809 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
YBX1P67809 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
YBX1P67809 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
YBX1P67809 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
YBX1P67809 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
YBX1P67809 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
YBX1P67809 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.16■□□□□ 0.5
YBX1P67809 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.16■□□□□ 0.5
YBX1P67809 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.16■□□□□ 0.5
YBX1P67809 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.16■□□□□ 0.5
YBX1P67809 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
YBX1P67809 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
YBX1P67809 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
YBX1P67809 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
YBX1P67809 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
YBX1P67809 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
YBX1P67809 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
YBX1P67809 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.15■□□□□ 0.5
YBX1P67809 AC116562.4-202ENST00000641738 218 ntBASIC18.15■□□□□ 0.5
YBX1P67809 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
YBX1P67809 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.15■□□□□ 0.5
YBX1P67809 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.15■□□□□ 0.5
YBX1P67809 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
YBX1P67809 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
YBX1P67809 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
YBX1P67809 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
YBX1P67809 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
YBX1P67809 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
YBX1P67809 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
YBX1P67809 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
YBX1P67809 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.15■□□□□ 0.5
YBX1P67809 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.15■□□□□ 0.5
YBX1P67809 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
YBX1P67809 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
YBX1P67809 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
YBX1P67809 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
YBX1P67809 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
YBX1P67809 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
YBX1P67809 AL023284.2-201ENST00000405850 579 ntBASIC18.14■□□□□ 0.49
YBX1P67809 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
YBX1P67809 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.14■□□□□ 0.49
YBX1P67809 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
YBX1P67809 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
YBX1P67809 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.14■□□□□ 0.49
YBX1P67809 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
YBX1P67809 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.14■□□□□ 0.49
YBX1P67809 KRT8P32-201ENST00000512863 1461 ntBASIC18.14■□□□□ 0.49
YBX1P67809 RCC2P3-201ENST00000418112 1537 ntBASIC18.13■□□□□ 0.49
YBX1P67809 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
YBX1P67809 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.13■□□□□ 0.49
YBX1P67809 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.13■□□□□ 0.49
YBX1P67809 AC008556.1-201ENST00000610908 2040 ntBASIC18.13■□□□□ 0.49
YBX1P67809 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
YBX1P67809 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
YBX1P67809 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
YBX1P67809 ANO7L1-203ENST00000602586 1720 ntBASIC18.13■□□□□ 0.49
YBX1P67809 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.13■□□□□ 0.49
YBX1P67809 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
YBX1P67809 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.13■□□□□ 0.49
YBX1P67809 CCR12P-201ENST00000446203 998 ntBASIC18.13■□□□□ 0.49
YBX1P67809 TSPY17P-201ENST00000450329 467 ntBASIC18.13■□□□□ 0.49
YBX1P67809 AC010203.1-204ENST00000548782 407 ntBASIC18.13■□□□□ 0.49
YBX1P67809 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
YBX1P67809 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.13■□□□□ 0.49
YBX1P67809 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
YBX1P67809 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
YBX1P67809 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
YBX1P67809 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
YBX1P67809 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
YBX1P67809 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
YBX1P67809 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
YBX1P67809 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
YBX1P67809 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
YBX1P67809 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
YBX1P67809 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.12■□□□□ 0.49
YBX1P67809 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.12■□□□□ 0.49
YBX1P67809 NOC2LP2-201ENST00000407594 1944 ntBASIC18.12■□□□□ 0.49
YBX1P67809 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
YBX1P67809 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.12■□□□□ 0.49
YBX1P67809 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
YBX1P67809 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.12■□□□□ 0.49
YBX1P67809 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
YBX1P67809 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms