Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
LIM2P55344 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.67■□□□□ 0.42
LIM2P55344 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
LIM2P55344 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
LIM2P55344 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
LIM2P55344 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.66■□□□□ 0.42
LIM2P55344 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LIM2P55344 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
LIM2P55344 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.66■□□□□ 0.42
LIM2P55344 ECEL1P3-201ENST00000427961 737 ntBASIC17.66■□□□□ 0.42
LIM2P55344 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.66■□□□□ 0.42
LIM2P55344 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.66■□□□□ 0.42
LIM2P55344 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.66■□□□□ 0.42
LIM2P55344 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.66■□□□□ 0.42
LIM2P55344 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
LIM2P55344 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIM2P55344 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LIM2P55344 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 AC005082.1-201ENST00000413042 2259 ntBASIC17.65■□□□□ 0.42
LIM2P55344 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 AC090164.3-201ENST00000610780 2143 ntBASIC17.65■□□□□ 0.42
LIM2P55344 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.65■□□□□ 0.42
LIM2P55344 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.65■□□□□ 0.42
LIM2P55344 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.65■□□□□ 0.42
LIM2P55344 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
LIM2P55344 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.65■□□□□ 0.42
LIM2P55344 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.65■□□□□ 0.42
LIM2P55344 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.65■□□□□ 0.42
LIM2P55344 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.65■□□□□ 0.42
LIM2P55344 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.65■□□□□ 0.42
LIM2P55344 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.65■□□□□ 0.42
LIM2P55344 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.65■□□□□ 0.42
LIM2P55344 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
LIM2P55344 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
LIM2P55344 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.65■□□□□ 0.42
LIM2P55344 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.65■□□□□ 0.42
LIM2P55344 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
LIM2P55344 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIM2P55344 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.42
LIM2P55344 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
LIM2P55344 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.42
LIM2P55344 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
LIM2P55344 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.64■□□□□ 0.41
LIM2P55344 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.64■□□□□ 0.41
LIM2P55344 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.64■□□□□ 0.41
LIM2P55344 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIM2P55344 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIM2P55344 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.64■□□□□ 0.41
LIM2P55344 AL512604.3-201ENST00000569583 964 ntBASIC17.64■□□□□ 0.41
LIM2P55344 AC005363.2-201ENST00000618631 242 ntBASIC17.64■□□□□ 0.41
LIM2P55344 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LIM2P55344 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
LIM2P55344 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
LIM2P55344 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIM2P55344 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIM2P55344 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.64■□□□□ 0.41
LIM2P55344 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIM2P55344 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIM2P55344 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.64■□□□□ 0.41
LIM2P55344 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.63■□□□□ 0.41
LIM2P55344 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.63■□□□□ 0.41
LIM2P55344 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIM2P55344 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.63■□□□□ 0.41
LIM2P55344 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIM2P55344 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LIM2P55344 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.63■□□□□ 0.41
LIM2P55344 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIM2P55344 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms