Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.78
COL4A4P53420 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.89■□□□□ 0.77
COL4A4P53420 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A4P53420 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A4P53420 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A4P53420 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC19.89■□□□□ 0.77
COL4A4P53420 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.89■□□□□ 0.77
COL4A4P53420 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A4P53420 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.89■□□□□ 0.77
COL4A4P53420 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.89■□□□□ 0.77
COL4A4P53420 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A4P53420 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
COL4A4P53420 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A4P53420 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A4P53420 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A4P53420 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A4P53420 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A4P53420 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
COL4A4P53420 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
COL4A4P53420 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL4A4P53420 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A4P53420 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A4P53420 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A4P53420 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.88■□□□□ 0.77
COL4A4P53420 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC19.88■□□□□ 0.77
COL4A4P53420 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A4P53420 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.88■□□□□ 0.77
COL4A4P53420 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
COL4A4P53420 HOXB1-202ENST00000577092 1414 ntBASIC19.88■□□□□ 0.77
COL4A4P53420 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A4P53420 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
COL4A4P53420 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A4P53420 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.88■□□□□ 0.77
COL4A4P53420 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A4P53420 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A4P53420 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.87■□□□□ 0.77
COL4A4P53420 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.87■□□□□ 0.77
COL4A4P53420 AL031284.1-201ENST00000419297 478 ntBASIC19.87■□□□□ 0.77
COL4A4P53420 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A4P53420 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.87■□□□□ 0.77
COL4A4P53420 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.87■□□□□ 0.77
COL4A4P53420 AC104390.1-201ENST00000555663 520 ntBASIC19.87■□□□□ 0.77
COL4A4P53420 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
COL4A4P53420 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.87■□□□□ 0.77
COL4A4P53420 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.87■□□□□ 0.77
COL4A4P53420 BNIP3P18-201ENST00000593976 575 ntBASIC19.87■□□□□ 0.77
COL4A4P53420 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
COL4A4P53420 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.87■□□□□ 0.77
COL4A4P53420 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A4P53420 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A4P53420 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 IRX1P1-201ENST00000438849 1838 ntBASIC19.87■□□□□ 0.77
COL4A4P53420 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A4P53420 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.87■□□□□ 0.77
COL4A4P53420 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.87■□□□□ 0.77
COL4A4P53420 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A4P53420 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.87■□□□□ 0.77
COL4A4P53420 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
COL4A4P53420 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A4P53420 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
COL4A4P53420 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A4P53420 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
COL4A4P53420 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A4P53420 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.86■□□□□ 0.77
COL4A4P53420 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A4P53420 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
COL4A4P53420 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A4P53420 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms