Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX2P48431 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC16.41■□□□□ 0.22
SOX2P48431 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX2P48431 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC16.41■□□□□ 0.22
SOX2P48431 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC16.41■□□□□ 0.22
SOX2P48431 RCC2P6-201ENST00000526625 1557 ntBASIC16.41■□□□□ 0.22
SOX2P48431 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX2P48431 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX2P48431 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX2P48431 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
SOX2P48431 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX2P48431 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX2P48431 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.41■□□□□ 0.22
SOX2P48431 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX2P48431 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX2P48431 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX2P48431 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
SOX2P48431 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
SOX2P48431 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
SOX2P48431 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SOX2P48431 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.4■□□□□ 0.22
SOX2P48431 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.4■□□□□ 0.22
SOX2P48431 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 AL162741.1-201ENST00000565563 1558 ntBASIC16.4■□□□□ 0.22
SOX2P48431 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SOX2P48431 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC16.4■□□□□ 0.22
SOX2P48431 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 C1QL1P1-201ENST00000568105 661 ntBASIC16.4■□□□□ 0.22
SOX2P48431 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC16.4■□□□□ 0.22
SOX2P48431 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 NBPF21P-201ENST00000425093 1451 ntBASIC16.4■□□□□ 0.22
SOX2P48431 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SOX2P48431 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.4■□□□□ 0.22
SOX2P48431 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX2P48431 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SOX2P48431 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.39■□□□□ 0.22
SOX2P48431 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX2P48431 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SOX2P48431 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SOX2P48431 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
SOX2P48431 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX2P48431 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.39■□□□□ 0.21
SOX2P48431 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX2P48431 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.39■□□□□ 0.21
SOX2P48431 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC16.39■□□□□ 0.21
SOX2P48431 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.39■□□□□ 0.21
SOX2P48431 MAP2K4P1-201ENST00000438453 1195 ntBASIC16.39■□□□□ 0.21
SOX2P48431 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.39■□□□□ 0.21
SOX2P48431 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.39■□□□□ 0.21
SOX2P48431 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC16.39■□□□□ 0.21
SOX2P48431 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.39■□□□□ 0.21
SOX2P48431 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.39■□□□□ 0.21
SOX2P48431 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.39■□□□□ 0.21
SOX2P48431 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
SOX2P48431 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX2P48431 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SOX2P48431 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX2P48431 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX2P48431 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX2P48431 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX2P48431 MTMR9LP-203ENST00000426597 1545 ntBASIC16.39■□□□□ 0.21
SOX2P48431 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SOX2P48431 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SOX2P48431 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX2P48431 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX2P48431 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX2P48431 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.38■□□□□ 0.21
SOX2P48431 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX2P48431 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX2P48431 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
SOX2P48431 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
SOX2P48431 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX2P48431 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX2P48431 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX2P48431 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SOX2P48431 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SOX2P48431 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.38■□□□□ 0.21
SOX2P48431 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX2P48431 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX2P48431 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SOX2P48431 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SOX2P48431 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.38■□□□□ 0.21
SOX2P48431 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.38■□□□□ 0.21
SOX2P48431 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms