Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
RFX3P48380 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.51■□□□□ 0.39
RFX3P48380 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
RFX3P48380 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.51■□□□□ 0.39
RFX3P48380 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RFX3P48380 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
RFX3P48380 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.51■□□□□ 0.39
RFX3P48380 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.51■□□□□ 0.39
RFX3P48380 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RFX3P48380 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
RFX3P48380 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RFX3P48380 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
RFX3P48380 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.51■□□□□ 0.39
RFX3P48380 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.51■□□□□ 0.39
RFX3P48380 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.51■□□□□ 0.39
RFX3P48380 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
RFX3P48380 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RFX3P48380 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RFX3P48380 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RFX3P48380 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
RFX3P48380 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.5■□□□□ 0.39
RFX3P48380 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFX3P48380 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.5■□□□□ 0.39
RFX3P48380 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFX3P48380 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.5■□□□□ 0.39
RFX3P48380 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RFX3P48380 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFX3P48380 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RFX3P48380 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFX3P48380 UNC93B2-201ENST00000285383 730 ntBASIC17.5■□□□□ 0.39
RFX3P48380 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
RFX3P48380 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RFX3P48380 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.5■□□□□ 0.39
RFX3P48380 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.5■□□□□ 0.39
RFX3P48380 MIR4497-201ENST00000583208 89 ntBASIC17.5■□□□□ 0.39
RFX3P48380 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.5■□□□□ 0.39
RFX3P48380 AP000525.1-201ENST00000608286 694 ntBASIC17.5■□□□□ 0.39
RFX3P48380 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.5■□□□□ 0.39
RFX3P48380 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.5■□□□□ 0.39
RFX3P48380 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFX3P48380 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFX3P48380 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFX3P48380 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFX3P48380 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
RFX3P48380 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFX3P48380 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.5■□□□□ 0.39
RFX3P48380 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 KRT17P2-201ENST00000300992 1314 ntBASIC17.49■□□□□ 0.39
RFX3P48380 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.49■□□□□ 0.39
RFX3P48380 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
RFX3P48380 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.49■□□□□ 0.39
RFX3P48380 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.49■□□□□ 0.39
RFX3P48380 AC005082.1-201ENST00000413042 2259 ntBASIC17.49■□□□□ 0.39
RFX3P48380 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 AL390955.1-201ENST00000428694 934 ntBASIC17.49■□□□□ 0.39
RFX3P48380 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.49■□□□□ 0.39
RFX3P48380 RBM17P1-201ENST00000453646 1190 ntBASIC17.49■□□□□ 0.39
RFX3P48380 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.49■□□□□ 0.39
RFX3P48380 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.49■□□□□ 0.39
RFX3P48380 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.49■□□□□ 0.39
RFX3P48380 DGCR10-201ENST00000609839 495 ntBASIC17.49■□□□□ 0.39
RFX3P48380 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
RFX3P48380 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
RFX3P48380 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX3P48380 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
RFX3P48380 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RFX3P48380 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
RFX3P48380 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.48■□□□□ 0.39
RFX3P48380 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.48■□□□□ 0.39
RFX3P48380 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
RFX3P48380 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
RFX3P48380 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
RFX3P48380 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
RFX3P48380 AL355075.4-201ENST00000554988 638 ntBASIC17.48■□□□□ 0.39
RFX3P48380 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.48■□□□□ 0.39
RFX3P48380 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.48■□□□□ 0.39
RFX3P48380 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX3P48380 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms