Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC15.19■□□□□ 0.02
CDX1P47902 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CDX1P47902 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
CDX1P47902 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC15.19■□□□□ 0.02
CDX1P47902 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC15.19■□□□□ 0.02
CDX1P47902 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 AC026471.5-201ENST00000615068 467 ntBASIC15.19■□□□□ 0.02
CDX1P47902 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
CDX1P47902 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC15.19■□□□□ 0.02
CDX1P47902 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.19■□□□□ 0.02
CDX1P47902 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.19■□□□□ 0.02
CDX1P47902 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC15.19■□□□□ 0.02
CDX1P47902 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 MOK-225ENST00000522867 1883 ntTSL 5 BASIC15.18■□□□□ 0.02
CDX1P47902 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CDX1P47902 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 TMEM179-206ENST00000616017 1645 ntBASIC15.18■□□□□ 0.02
CDX1P47902 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
CDX1P47902 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CDX1P47902 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
CDX1P47902 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.18■□□□□ 0.02
CDX1P47902 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 FAM197Y1-201ENST00000421178 764 ntBASIC15.18■□□□□ 0.02
CDX1P47902 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC15.18■□□□□ 0.02
CDX1P47902 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC15.18■□□□□ 0.02
CDX1P47902 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC15.18■□□□□ 0.02
CDX1P47902 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC15.18■□□□□ 0.02
CDX1P47902 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC15.18■□□□□ 0.02
CDX1P47902 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC15.18■□□□□ 0.02
CDX1P47902 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC15.18■□□□□ 0.02
CDX1P47902 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.18■□□□□ 0.02
CDX1P47902 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.18■□□□□ 0.02
CDX1P47902 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDX1P47902 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC15.17■□□□□ 0.02
CDX1P47902 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC15.17■□□□□ 0.02
CDX1P47902 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.17■□□□□ 0.02
CDX1P47902 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC15.17■□□□□ 0.02
CDX1P47902 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC15.17■□□□□ 0.02
CDX1P47902 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC15.17■□□□□ 0.02
CDX1P47902 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC15.17■□□□□ 0.02
CDX1P47902 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC15.17■□□□□ 0.02
CDX1P47902 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC15.17■□□□□ 0.02
CDX1P47902 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 GRAP-204ENST00000573099 846 ntTSL 3 BASIC15.17■□□□□ 0.02
CDX1P47902 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC15.17■□□□□ 0.02
CDX1P47902 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CDX1P47902 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
CDX1P47902 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CDX1P47902 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CDX1P47902 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.17■□□□□ 0.02
CDX1P47902 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC15.17■□□□□ 0.02
CDX1P47902 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 PCDHA12-202ENST00000613593 2588 ntBASIC15.17■□□□□ 0.02
CDX1P47902 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms