Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 HLA-F-220ENST00000434407 884 ntBASIC20.95■□□□□ 0.94
CIITAP33076 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.95■□□□□ 0.94
CIITAP33076 AC092597.1-201ENST00000487352 616 ntBASIC20.95■□□□□ 0.94
CIITAP33076 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CIITAP33076 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.95■□□□□ 0.94
CIITAP33076 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.95■□□□□ 0.94
CIITAP33076 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.95■□□□□ 0.94
CIITAP33076 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.95■□□□□ 0.94
CIITAP33076 AC083849.1-201ENST00000615227 514 ntBASIC20.95■□□□□ 0.94
CIITAP33076 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CIITAP33076 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CIITAP33076 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CIITAP33076 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.95■□□□□ 0.94
CIITAP33076 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CIITAP33076 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CIITAP33076 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CIITAP33076 TNXA-203ENST00000507684 2038 ntBASIC20.94■□□□□ 0.94
CIITAP33076 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CIITAP33076 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CIITAP33076 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CIITAP33076 ARMC10P1-201ENST00000313754 855 ntBASIC20.94■□□□□ 0.94
CIITAP33076 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.94■□□□□ 0.94
CIITAP33076 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CIITAP33076 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.94■□□□□ 0.94
CIITAP33076 SPDYE13P-201ENST00000445314 798 ntBASIC20.94■□□□□ 0.94
CIITAP33076 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.94■□□□□ 0.94
CIITAP33076 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.94■□□□□ 0.94
CIITAP33076 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.94■□□□□ 0.94
CIITAP33076 AL121956.5-201ENST00000625261 221 ntBASIC20.94■□□□□ 0.94
CIITAP33076 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CIITAP33076 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CIITAP33076 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CIITAP33076 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CIITAP33076 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CIITAP33076 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CIITAP33076 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CIITAP33076 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CIITAP33076 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CIITAP33076 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CIITAP33076 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CIITAP33076 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.93■□□□□ 0.94
CIITAP33076 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.93■□□□□ 0.94
CIITAP33076 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CIITAP33076 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CIITAP33076 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CIITAP33076 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CIITAP33076 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CIITAP33076 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.93■□□□□ 0.94
CIITAP33076 PVRIG2P-201ENST00000435460 978 ntBASIC20.93■□□□□ 0.94
CIITAP33076 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.93■□□□□ 0.94
CIITAP33076 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.93■□□□□ 0.94
CIITAP33076 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.93■□□□□ 0.94
CIITAP33076 AC009065.1-201ENST00000564055 1225 ntBASIC20.93■□□□□ 0.94
CIITAP33076 AC087388.1-201ENST00000571370 1112 ntBASIC20.93■□□□□ 0.94
CIITAP33076 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.93■□□□□ 0.94
CIITAP33076 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CIITAP33076 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CIITAP33076 LINC01311-201ENST00000565162 1445 ntBASIC20.93■□□□□ 0.94
CIITAP33076 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CIITAP33076 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.92■□□□□ 0.94
CIITAP33076 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.92■□□□□ 0.94
CIITAP33076 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 AL391807.1-203ENST00000604392 2365 ntBASIC20.92■□□□□ 0.94
CIITAP33076 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CIITAP33076 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.92■□□□□ 0.94
CIITAP33076 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.92■□□□□ 0.94
CIITAP33076 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.92■□□□□ 0.94
CIITAP33076 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.92■□□□□ 0.94
CIITAP33076 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CIITAP33076 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CIITAP33076 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.92■□□□□ 0.94
CIITAP33076 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CIITAP33076 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.92■□□□□ 0.94
CIITAP33076 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CIITAP33076 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CIITAP33076 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CIITAP33076 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CIITAP33076 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CIITAP33076 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CIITAP33076 MIR149-201ENST00000384879 89 ntBASIC20.91■□□□□ 0.94
CIITAP33076 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
CIITAP33076 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.91■□□□□ 0.94
CIITAP33076 FAM86EP-206ENST00000510506 987 ntBASIC20.91■□□□□ 0.94
CIITAP33076 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CIITAP33076 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.91■□□□□ 0.94
CIITAP33076 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.91■□□□□ 0.94
CIITAP33076 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CIITAP33076 ZNF444P1-201ENST00000559497 298 ntBASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms