Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
COL6A3P12111 AC121338.2-201ENST00000622535 1744 ntBASIC19.37■□□□□ 0.69
COL6A3P12111 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 AC104417.2-201ENST00000562989 1793 ntBASIC19.37■□□□□ 0.69
COL6A3P12111 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.37■□□□□ 0.69
COL6A3P12111 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC19.37■□□□□ 0.69
COL6A3P12111 RNA5SP421-201ENST00000516864 134 ntBASIC19.37■□□□□ 0.69
COL6A3P12111 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
COL6A3P12111 AP000867.4-201ENST00000641616 219 ntBASIC19.37■□□□□ 0.69
COL6A3P12111 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.37■□□□□ 0.69
COL6A3P12111 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
COL6A3P12111 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.37■□□□□ 0.69
COL6A3P12111 NAA50-208ENST00000497255 789 ntTSL 5 BASIC19.37■□□□□ 0.69
COL6A3P12111 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.37■□□□□ 0.69
COL6A3P12111 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A3P12111 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A3P12111 ARSEP1-201ENST00000420443 635 ntBASIC19.36■□□□□ 0.69
COL6A3P12111 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.36■□□□□ 0.69
COL6A3P12111 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.36■□□□□ 0.69
COL6A3P12111 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A3P12111 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A3P12111 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A3P12111 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.36■□□□□ 0.69
COL6A3P12111 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A3P12111 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC19.36■□□□□ 0.69
COL6A3P12111 PARP8-218ENST00000513738 596 ntTSL 4 BASIC19.36■□□□□ 0.69
COL6A3P12111 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.36■□□□□ 0.69
COL6A3P12111 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
COL6A3P12111 AC105339.3-201ENST00000560043 636 ntBASIC19.36■□□□□ 0.69
COL6A3P12111 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.36■□□□□ 0.69
COL6A3P12111 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.36■□□□□ 0.69
COL6A3P12111 CECR7-204ENST00000609932 568 ntTSL 2 BASIC19.36■□□□□ 0.69
COL6A3P12111 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A3P12111 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A3P12111 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A3P12111 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A3P12111 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A3P12111 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A3P12111 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
COL6A3P12111 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
COL6A3P12111 SLBP-205ENST00000488267 987 ntTSL 2 BASIC19.36■□□□□ 0.69
COL6A3P12111 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A3P12111 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A3P12111 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A3P12111 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A3P12111 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A3P12111 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
COL6A3P12111 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
COL6A3P12111 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A3P12111 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
COL6A3P12111 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.35■□□□□ 0.69
COL6A3P12111 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A3P12111 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.35■□□□□ 0.69
COL6A3P12111 GRAP-202ENST00000395635 834 ntTSL 2 BASIC19.35■□□□□ 0.69
COL6A3P12111 AC004945.1-201ENST00000416738 983 ntBASIC19.35■□□□□ 0.69
COL6A3P12111 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.35■□□□□ 0.69
COL6A3P12111 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC19.35■□□□□ 0.69
COL6A3P12111 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
COL6A3P12111 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
COL6A3P12111 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A3P12111 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC19.35■□□□□ 0.69
COL6A3P12111 CEND1P1-201ENST00000451006 455 ntBASIC19.35■□□□□ 0.69
COL6A3P12111 AC108751.1-201ENST00000490852 363 ntBASIC19.35■□□□□ 0.69
COL6A3P12111 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.35■□□□□ 0.69
COL6A3P12111 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.35■□□□□ 0.69
COL6A3P12111 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.35■□□□□ 0.69
COL6A3P12111 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
COL6A3P12111 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.35■□□□□ 0.69
COL6A3P12111 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
COL6A3P12111 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
COL6A3P12111 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.34■□□□□ 0.69
COL6A3P12111 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.34■□□□□ 0.69
COL6A3P12111 TERF1P3-201ENST00000505638 1227 ntBASIC19.34■□□□□ 0.69
COL6A3P12111 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC19.34■□□□□ 0.69
COL6A3P12111 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.34■□□□□ 0.69
COL6A3P12111 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.34■□□□□ 0.69
COL6A3P12111 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL6A3P12111 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A3P12111 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A3P12111 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A3P12111 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.34■□□□□ 0.69
COL6A3P12111 AC024563.2-201ENST00000603282 481 ntBASIC19.34■□□□□ 0.69
COL6A3P12111 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.34■□□□□ 0.69
COL6A3P12111 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A3P12111 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A3P12111 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A3P12111 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms