Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CTDNEP1O95476 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTDNEP1O95476 AC093677.2-201ENST00000600169 1863 ntBASIC21.57■■□□□ 1.04
CTDNEP1O95476 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTDNEP1O95476 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTDNEP1O95476 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTDNEP1O95476 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTDNEP1O95476 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 AL162741.1-201ENST00000565563 1558 ntBASIC21.57■■□□□ 1.04
CTDNEP1O95476 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.56■■□□□ 1.04
CTDNEP1O95476 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.56■■□□□ 1.04
CTDNEP1O95476 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.56■■□□□ 1.04
CTDNEP1O95476 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 CCR12P-201ENST00000446203 998 ntBASIC21.56■■□□□ 1.04
CTDNEP1O95476 EGLN1P1-201ENST00000531623 762 ntBASIC21.56■■□□□ 1.04
CTDNEP1O95476 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.56■■□□□ 1.04
CTDNEP1O95476 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.56■■□□□ 1.04
CTDNEP1O95476 AC116562.4-202ENST00000641738 218 ntBASIC21.56■■□□□ 1.04
CTDNEP1O95476 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CTDNEP1O95476 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CTDNEP1O95476 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CTDNEP1O95476 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CTDNEP1O95476 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.56■■□□□ 1.04
CTDNEP1O95476 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.56■■□□□ 1.04
CTDNEP1O95476 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CTDNEP1O95476 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.55■■□□□ 1.04
CTDNEP1O95476 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 MMP23A-201ENST00000234610 1017 ntBASIC21.55■■□□□ 1.04
CTDNEP1O95476 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.55■■□□□ 1.04
CTDNEP1O95476 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
CTDNEP1O95476 BX088651.1-201ENST00000540551 451 ntBASIC21.55■■□□□ 1.04
CTDNEP1O95476 C2orf69P3-201ENST00000565542 1120 ntBASIC21.55■■□□□ 1.04
CTDNEP1O95476 NAT14-202ENST00000587400 416 ntTSL 5 BASIC21.55■■□□□ 1.04
CTDNEP1O95476 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.55■■□□□ 1.04
CTDNEP1O95476 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTDNEP1O95476 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CTDNEP1O95476 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTDNEP1O95476 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTDNEP1O95476 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTDNEP1O95476 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CTDNEP1O95476 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTDNEP1O95476 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.54■■□□□ 1.04
CTDNEP1O95476 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
CTDNEP1O95476 FAM87A-204ENST00000613235 858 ntBASIC21.54■■□□□ 1.04
CTDNEP1O95476 AC010653.2-201ENST00000623505 997 ntBASIC21.54■■□□□ 1.04
CTDNEP1O95476 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
CTDNEP1O95476 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.54■■□□□ 1.04
CTDNEP1O95476 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.54■■□□□ 1.04
CTDNEP1O95476 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CTDNEP1O95476 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.54■■□□□ 1.04
CTDNEP1O95476 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.54■■□□□ 1.04
CTDNEP1O95476 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CTDNEP1O95476 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDNEP1O95476 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
CTDNEP1O95476 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.53■■□□□ 1.04
CTDNEP1O95476 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
CTDNEP1O95476 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDNEP1O95476 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.53■■□□□ 1.04
CTDNEP1O95476 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDNEP1O95476 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDNEP1O95476 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDNEP1O95476 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDNEP1O95476 AP000593.1-201ENST00000393668 712 ntBASIC21.53■■□□□ 1.04
CTDNEP1O95476 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CTDNEP1O95476 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC21.53■■□□□ 1.04
CTDNEP1O95476 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.53■■□□□ 1.04
CTDNEP1O95476 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms