Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SSSCA1O60232 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 SERPINH1P1-201ENST00000419794 1249 ntBASIC15.2■□□□□ 0.02
SSSCA1O60232 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 KRT18P16-201ENST00000510337 1294 ntBASIC15.2■□□□□ 0.02
SSSCA1O60232 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC15.2■□□□□ 0.02
SSSCA1O60232 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SSSCA1O60232 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SSSCA1O60232 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SSSCA1O60232 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SSSCA1O60232 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
SSSCA1O60232 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC15.2■□□□□ 0.02
SSSCA1O60232 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC15.2■□□□□ 0.02
SSSCA1O60232 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SSSCA1O60232 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.2■□□□□ 0.02
SSSCA1O60232 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC15.2■□□□□ 0.02
SSSCA1O60232 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SSSCA1O60232 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SSSCA1O60232 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
SSSCA1O60232 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.19■□□□□ 0.02
SSSCA1O60232 AC099398.1-201ENST00000567919 2776 ntBASIC15.19■□□□□ 0.02
SSSCA1O60232 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
SSSCA1O60232 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SSSCA1O60232 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SSSCA1O60232 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SSSCA1O60232 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC15.19■□□□□ 0.02
SSSCA1O60232 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SSSCA1O60232 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
SSSCA1O60232 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
SSSCA1O60232 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SSSCA1O60232 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SSSCA1O60232 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.19■□□□□ 0.02
SSSCA1O60232 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SSSCA1O60232 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
SSSCA1O60232 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
SSSCA1O60232 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC15.19■□□□□ 0.02
SSSCA1O60232 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC15.19■□□□□ 0.02
SSSCA1O60232 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC15.19■□□□□ 0.02
SSSCA1O60232 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC15.19■□□□□ 0.02
SSSCA1O60232 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SSSCA1O60232 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SSSCA1O60232 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SSSCA1O60232 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SSSCA1O60232 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC15.19■□□□□ 0.02
SSSCA1O60232 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
SSSCA1O60232 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SSSCA1O60232 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
SSSCA1O60232 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC15.18■□□□□ 0.02
SSSCA1O60232 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SSSCA1O60232 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.18■□□□□ 0.02
SSSCA1O60232 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.18■□□□□ 0.02
SSSCA1O60232 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC15.18■□□□□ 0.02
SSSCA1O60232 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC15.18■□□□□ 0.02
SSSCA1O60232 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
SSSCA1O60232 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
SSSCA1O60232 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC15.18■□□□□ 0.02
SSSCA1O60232 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SSSCA1O60232 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 MAX-217ENST00000557277 728 ntTSL 3 BASIC15.18■□□□□ 0.02
SSSCA1O60232 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SSSCA1O60232 MAZ-216ENST00000616501 991 ntTSL 5 BASIC15.18■□□□□ 0.02
SSSCA1O60232 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SSSCA1O60232 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC15.18■□□□□ 0.02
SSSCA1O60232 AC009053.2-201ENST00000563701 2365 ntBASIC15.18■□□□□ 0.02
SSSCA1O60232 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SSSCA1O60232 FER1L4-210ENST00000615531 5998 ntBASIC15.18■□□□□ 0.02
SSSCA1O60232 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC15.17■□□□□ 0.02
SSSCA1O60232 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC15.17■□□□□ 0.02
SSSCA1O60232 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms