Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 AL645939.2-201ENST00000427340 991 ntBASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 RNA5SP416-201ENST00000516838 111 ntBASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 RPS2P28-201ENST00000314255 741 ntBASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 AC002310.6-201ENST00000624451 1377 ntBASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 MIR770-201ENST00000390219 98 ntBASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
COL6A6A6NMZ7 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 AC007967.2-201ENST00000432613 625 ntBASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 RPS2P1-201ENST00000434010 821 ntBASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.71■□□□□ 0.27
COL6A6A6NMZ7 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
COL6A6A6NMZ7 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A6A6NMZ7 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A6A6NMZ7 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A6A6NMZ7 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A6A6NMZ7 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A6A6NMZ7 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A6A6NMZ7 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.7■□□□□ 0.26
COL6A6A6NMZ7 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A6A6NMZ7 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A6A6NMZ7 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A6A6NMZ7 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
COL6A6A6NMZ7 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms