Protein–RNA interactions for Protein: A6NGU7

LINC01546, Putative uncharacterized protein encoded by LINC01546, humanhuman

Predictions only

Length 62 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01546A6NGU7 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01546A6NGU7 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC13.15□□□□□ -0.3
LINC01546A6NGU7 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01546A6NGU7 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
LINC01546A6NGU7 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 KRT18P11-201ENST00000435214 1283 ntBASIC13.14□□□□□ -0.31
LINC01546A6NGU7 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
LINC01546A6NGU7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 PHGDH-209ENST00000641074 1780 ntBASIC13.13□□□□□ -0.31
LINC01546A6NGU7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 CYP2T1P-201ENST00000432607 1285 ntBASIC13.13□□□□□ -0.31
LINC01546A6NGU7 RPS2P52-201ENST00000469610 820 ntBASIC13.13□□□□□ -0.31
LINC01546A6NGU7 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 KRT8P3-201ENST00000519669 1449 ntBASIC13.13□□□□□ -0.31
LINC01546A6NGU7 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01546A6NGU7 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 GMCL1P1-201ENST00000463439 1581 ntBASIC13.12□□□□□ -0.31
LINC01546A6NGU7 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01546A6NGU7 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms