Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
PCDHGA1Q9Y5H4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
PCDHGA1Q9Y5H4 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 AL671883.3-201ENST00000603274 991 ntBASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDHGA1Q9Y5H4 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 AC034236.2-201ENST00000606662 1610 ntBASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 POM121L3P-201ENST00000419331 1163 ntBASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 TSPY12P-201ENST00000421279 868 ntBASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 AP001005.1-201ENST00000571755 1248 ntBASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 AC024563.2-201ENST00000603282 481 ntBASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 AC124864.1-201ENST00000623408 392 ntBASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 KRT89P-201ENST00000620027 1478 ntBASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 NSUN5P1-202ENST00000421140 1535 ntBASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 NSUN5P2-203ENST00000457352 1529 ntBASIC17.88■□□□□ 0.45
PCDHGA1Q9Y5H4 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 AC009065.1-201ENST00000564055 1225 ntBASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms