Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 AC090164.3-201ENST00000610780 2143 ntBASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.34■□□□□ 0.69
AP4E1Q9UPM8 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
AP4E1Q9UPM8 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 AC087499.1-201ENST00000418141 1075 ntBASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 CR769767.2-201ENST00000622735 460 ntBASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 AC034236.2-201ENST00000606662 1610 ntBASIC19.33■□□□□ 0.68
AP4E1Q9UPM8 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 KRT18P41-201ENST00000518924 1277 ntBASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.32■□□□□ 0.68
AP4E1Q9UPM8 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 AC073592.3-201ENST00000625118 1834 ntBASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 ECEL1P2-202ENST00000465689 757 ntBASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 FAM87A-204ENST00000613235 858 ntBASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms