Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 MIR3180-4-201ENST00000582223 153 ntBASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 ATP6V0CP3-201ENST00000417255 467 ntBASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 CRCP-205ENST00000431089 942 ntTSL 2 BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 PNKD-204ENST00000436005 978 ntTSL 5 BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 AP002414.3-201ENST00000589352 1468 ntBASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 RCC2P3-201ENST00000418112 1537 ntBASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL17A1Q9UMD9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 ME2-216ENST00000639850 2331 ntTSL 5 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 SYS1-203ENST00000414310 795 ntTSL 3 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 AC009947.1-201ENST00000444350 727 ntBASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 CFL1-202ENST00000524553 860 ntTSL 2 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC28.15■■■□□ 2.1
COL17A1Q9UMD9 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
COL17A1Q9UMD9 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC28.14■■■□□ 2.1
COL17A1Q9UMD9 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC28.14■■■□□ 2.09
COL17A1Q9UMD9 AP005117.1-201ENST00000584346 1413 ntBASIC28.14■■■□□ 2.09
COL17A1Q9UMD9 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.09
COL17A1Q9UMD9 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC28.14■■■□□ 2.09
COL17A1Q9UMD9 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC28.14■■■□□ 2.09
COL17A1Q9UMD9 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC28.14■■■□□ 2.09
COL17A1Q9UMD9 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC28.14■■■□□ 2.09
COL17A1Q9UMD9 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC28.14■■■□□ 2.09
COL17A1Q9UMD9 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC28.14■■■□□ 2.09
COL17A1Q9UMD9 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC28.14■■■□□ 2.09
COL17A1Q9UMD9 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC28.14■■■□□ 2.09
COL17A1Q9UMD9 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 INTS4P1-201ENST00000438455 1935 ntBASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 MCCD1P2-201ENST00000423228 335 ntBASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 RBSN-204ENST00000449050 903 ntTSL 2 BASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 COPE-211ENST00000600932 1144 ntTSL 5 BASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 AL691432.2-201ENST00000607222 2038 ntBASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL17A1Q9UMD9 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 RAB17-203ENST00000409576 466 ntTSL 3 BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 AC254562.1-201ENST00000417586 456 ntBASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 AC011467.4-201ENST00000594891 528 ntBASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms