Protein–RNA interactions for Protein: Q9UKN8

GTF3C4, General transcription factor 3C polypeptide 4, humanhuman

Predictions only

Length 822 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C4Q9UKN8 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 AC009113.1-201ENST00000570267 2443 ntBASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 COX11P1-201ENST00000489116 835 ntBASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 KRT18P35-201ENST00000510488 1269 ntBASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 KRT8P3-201ENST00000519669 1449 ntBASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 AL590326.2-201ENST00000625139 305 ntBASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.06■□□□□ 0.8
GTF3C4Q9UKN8 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 YBX1P2-201ENST00000489612 999 ntBASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 WWOX-216ENST00000569818 525 ntBASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 AC104581.1-202ENST00000635932 2618 ntBASIC20.05■□□□□ 0.8
GTF3C4Q9UKN8 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 AC011558.1-201ENST00000623459 338 ntBASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.04■□□□□ 0.8
GTF3C4Q9UKN8 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.03■□□□□ 0.8
GTF3C4Q9UKN8 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.03■□□□□ 0.8
GTF3C4Q9UKN8 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
GTF3C4Q9UKN8 AC090164.3-201ENST00000610780 2143 ntBASIC20.03■□□□□ 0.8
GTF3C4Q9UKN8 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.03■□□□□ 0.8
GTF3C4Q9UKN8 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
GTF3C4Q9UKN8 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
GTF3C4Q9UKN8 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms