Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 AC112777.1-201ENST00000540175 1423 ntBASIC16.67■□□□□ 0.26
VSX1Q9NZR4 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 AL390961.4-201ENST00000623958 2535 ntBASIC16.66■□□□□ 0.26
VSX1Q9NZR4 AC096733.2-201ENST00000609937 1394 ntBASIC16.66■□□□□ 0.26
VSX1Q9NZR4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 AL354751.1-201ENST00000412768 1863 ntBASIC16.66■□□□□ 0.26
VSX1Q9NZR4 KRT8P45-201ENST00000414328 1447 ntBASIC16.66■□□□□ 0.26
VSX1Q9NZR4 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 AC116562.2-201ENST00000507042 360 ntBASIC16.66■□□□□ 0.26
VSX1Q9NZR4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 AC142381.4-202ENST00000563973 229 ntBASIC16.66■□□□□ 0.26
VSX1Q9NZR4 AL499627.1-201ENST00000569373 2188 ntBASIC16.66■□□□□ 0.26
VSX1Q9NZR4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 DGCR10-201ENST00000609839 495 ntBASIC16.66■□□□□ 0.26
VSX1Q9NZR4 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VSX1Q9NZR4 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 UBE2SP1-201ENST00000450587 669 ntBASIC16.65■□□□□ 0.26
VSX1Q9NZR4 AC098590.1-201ENST00000468126 897 ntBASIC16.65■□□□□ 0.26
VSX1Q9NZR4 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
VSX1Q9NZR4 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
VSX1Q9NZR4 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
VSX1Q9NZR4 AL162741.1-201ENST00000565563 1558 ntBASIC16.64■□□□□ 0.25
VSX1Q9NZR4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms