Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.1■□□□□ 0.33
TIMP4Q99727 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
TIMP4Q99727 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TIMP4Q99727 AC117947.1-201ENST00000427448 529 ntBASIC17.1■□□□□ 0.33
TIMP4Q99727 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.1■□□□□ 0.33
TIMP4Q99727 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.1■□□□□ 0.33
TIMP4Q99727 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TIMP4Q99727 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.1■□□□□ 0.33
TIMP4Q99727 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.1■□□□□ 0.33
TIMP4Q99727 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TIMP4Q99727 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.1■□□□□ 0.33
TIMP4Q99727 AC139887.4-201ENST00000607877 719 ntBASIC17.1■□□□□ 0.33
TIMP4Q99727 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TIMP4Q99727 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TIMP4Q99727 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TIMP4Q99727 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.1■□□□□ 0.33
TIMP4Q99727 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TIMP4Q99727 AL133373.2-201ENST00000623187 2828 ntBASIC17.1■□□□□ 0.33
TIMP4Q99727 IRX1P1-201ENST00000438849 1838 ntBASIC17.1■□□□□ 0.33
TIMP4Q99727 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.09■□□□□ 0.33
TIMP4Q99727 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.09■□□□□ 0.33
TIMP4Q99727 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.09■□□□□ 0.33
TIMP4Q99727 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.09■□□□□ 0.33
TIMP4Q99727 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
TIMP4Q99727 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.09■□□□□ 0.33
TIMP4Q99727 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.09■□□□□ 0.33
TIMP4Q99727 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.09■□□□□ 0.33
TIMP4Q99727 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.09■□□□□ 0.33
TIMP4Q99727 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.09■□□□□ 0.33
TIMP4Q99727 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
TIMP4Q99727 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TIMP4Q99727 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.09■□□□□ 0.33
TIMP4Q99727 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.09■□□□□ 0.33
TIMP4Q99727 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.09■□□□□ 0.33
TIMP4Q99727 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
TIMP4Q99727 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.09■□□□□ 0.33
TIMP4Q99727 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TIMP4Q99727 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
TIMP4Q99727 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
TIMP4Q99727 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TIMP4Q99727 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
TIMP4Q99727 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TIMP4Q99727 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TIMP4Q99727 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TIMP4Q99727 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TIMP4Q99727 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TIMP4Q99727 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.08■□□□□ 0.33
TIMP4Q99727 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
TIMP4Q99727 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TIMP4Q99727 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.08■□□□□ 0.32
TIMP4Q99727 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TIMP4Q99727 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.08■□□□□ 0.32
TIMP4Q99727 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.08■□□□□ 0.32
TIMP4Q99727 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TIMP4Q99727 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TIMP4Q99727 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TIMP4Q99727 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.08■□□□□ 0.32
TIMP4Q99727 COX11P1-201ENST00000489116 835 ntBASIC17.08■□□□□ 0.32
TIMP4Q99727 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.08■□□□□ 0.32
TIMP4Q99727 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.08■□□□□ 0.32
TIMP4Q99727 WWOX-216ENST00000569818 525 ntBASIC17.08■□□□□ 0.32
TIMP4Q99727 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TIMP4Q99727 NTF6B-201ENST00000591913 560 ntBASIC17.08■□□□□ 0.32
TIMP4Q99727 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.08■□□□□ 0.32
TIMP4Q99727 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TIMP4Q99727 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TIMP4Q99727 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TIMP4Q99727 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TIMP4Q99727 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TIMP4Q99727 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.07■□□□□ 0.32
TIMP4Q99727 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TIMP4Q99727 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TIMP4Q99727 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.07■□□□□ 0.32
TIMP4Q99727 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.07■□□□□ 0.32
TIMP4Q99727 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.07■□□□□ 0.32
TIMP4Q99727 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.07■□□□□ 0.32
TIMP4Q99727 KRT8P45-201ENST00000414328 1447 ntBASIC17.07■□□□□ 0.32
TIMP4Q99727 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.07■□□□□ 0.32
TIMP4Q99727 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TIMP4Q99727 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TIMP4Q99727 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TIMP4Q99727 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms