Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 CAND2-206ENST00000626378 333 ntTSL 5 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 AC112777.1-201ENST00000540175 1423 ntBASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 AC023274.1-201ENST00000418278 595 ntBASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 AC004832.2-201ENST00000426397 482 ntBASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 KRT18P27-201ENST00000427733 1299 ntBASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 TP73-AS1-210ENST00000637775 1455 ntBASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 AC011840.4-201ENST00000578471 627 ntBASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC12.54□□□□□ -0.4
ALMS1Q8TCU4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 AC007967.2-201ENST00000432613 625 ntBASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 UNC93B6-202ENST00000528242 690 ntBASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 AC006333.2-201ENST00000607957 2099 ntBASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 KRT89P-201ENST00000620027 1478 ntBASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 AP005117.1-201ENST00000584346 1413 ntBASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 ATP6V0CP3-201ENST00000417255 467 ntBASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
ALMS1Q8TCU4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC12.52□□□□□ -0.4
ALMS1Q8TCU4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 AL357033.4-201ENST00000617703 1807 ntBASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
ALMS1Q8TCU4 FUOM-202ENST00000368551 628 ntTSL 3 BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms