Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 KRT8P8-201ENST00000434750 1448 ntBASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.35■□□□□ 0.37
DEPDC4Q8N2C3 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 RPS2P4-201ENST00000476944 856 ntBASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
DEPDC4Q8N2C3 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
DEPDC4Q8N2C3 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
DEPDC4Q8N2C3 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
DEPDC4Q8N2C3 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
DEPDC4Q8N2C3 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.33■□□□□ 0.37
DEPDC4Q8N2C3 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
DEPDC4Q8N2C3 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
DEPDC4Q8N2C3 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
DEPDC4Q8N2C3 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
DEPDC4Q8N2C3 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.33■□□□□ 0.37
DEPDC4Q8N2C3 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.33■□□□□ 0.37
DEPDC4Q8N2C3 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
DEPDC4Q8N2C3 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 AC239809.2-201ENST00000415381 517 ntBASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms