Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 AC092597.1-201ENST00000487352 616 ntBASIC20.2■□□□□ 0.82
VPS52Q8N1B4 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 BX323043.1-201ENST00000641006 1765 ntBASIC20.2■□□□□ 0.82
VPS52Q8N1B4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 AC024243.1-201ENST00000609234 778 ntBASIC20.19■□□□□ 0.82
VPS52Q8N1B4 AC012313.10-201ENST00000623509 926 ntBASIC20.19■□□□□ 0.82
VPS52Q8N1B4 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.19■□□□□ 0.82
VPS52Q8N1B4 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 AC093484.2-201ENST00000580996 2166 ntBASIC20.18■□□□□ 0.82
VPS52Q8N1B4 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 AC026396.1-201ENST00000419388 421 ntBASIC20.18■□□□□ 0.82
VPS52Q8N1B4 AL645929.1-201ENST00000420084 975 ntBASIC20.18■□□□□ 0.82
VPS52Q8N1B4 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS52Q8N1B4 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 AC036111.1-201ENST00000533973 1582 ntBASIC20.17■□□□□ 0.82
VPS52Q8N1B4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 AL023284.2-201ENST00000405850 579 ntBASIC20.17■□□□□ 0.82
VPS52Q8N1B4 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
VPS52Q8N1B4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms