Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
NUDCD3Q8IVD9 AC008687.6-201ENST00000596318 630 ntBASIC18.55■□□□□ 0.56
NUDCD3Q8IVD9 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.55■□□□□ 0.56
NUDCD3Q8IVD9 AC092437.1-201ENST00000624794 1048 ntBASIC18.55■□□□□ 0.56
NUDCD3Q8IVD9 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
NUDCD3Q8IVD9 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NUDCD3Q8IVD9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.55■□□□□ 0.56
NUDCD3Q8IVD9 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NUDCD3Q8IVD9 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.55■□□□□ 0.56
NUDCD3Q8IVD9 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NUDCD3Q8IVD9 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 SOX15-203ENST00000570788 1093 ntBASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 MIR4758-201ENST00000577688 71 ntBASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 MYC-209ENST00000641252 345 ntBASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 PKD1P1-201ENST00000458669 6805 ntBASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.54■□□□□ 0.56
NUDCD3Q8IVD9 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 SLC29A4P1-201ENST00000398760 971 ntBASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 MYC-208ENST00000641036 567 ntBASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 AC068587.9-201ENST00000641814 219 ntBASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUDCD3Q8IVD9 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
NUDCD3Q8IVD9 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
NUDCD3Q8IVD9 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
NUDCD3Q8IVD9 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.52■□□□□ 0.55
NUDCD3Q8IVD9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.52■□□□□ 0.55
NUDCD3Q8IVD9 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.52■□□□□ 0.55
NUDCD3Q8IVD9 AC134043.2-201ENST00000624206 2238 ntBASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms