Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.21■□□□□ 0.51
VRK3Q8IV63 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
VRK3Q8IV63 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.21■□□□□ 0.51
VRK3Q8IV63 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.21■□□□□ 0.51
VRK3Q8IV63 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.21■□□□□ 0.51
VRK3Q8IV63 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.21■□□□□ 0.51
VRK3Q8IV63 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.21■□□□□ 0.51
VRK3Q8IV63 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
VRK3Q8IV63 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
VRK3Q8IV63 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 KRT8P50-201ENST00000562022 1438 ntBASIC18.21■□□□□ 0.51
VRK3Q8IV63 AC073508.3-201ENST00000619697 1419 ntBASIC18.21■□□□□ 0.51
VRK3Q8IV63 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
VRK3Q8IV63 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
VRK3Q8IV63 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VRK3Q8IV63 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VRK3Q8IV63 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VRK3Q8IV63 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VRK3Q8IV63 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VRK3Q8IV63 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 KRT18P41-201ENST00000518924 1277 ntBASIC18.2■□□□□ 0.5
VRK3Q8IV63 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VRK3Q8IV63 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 AC141257.4-201ENST00000634557 245 ntBASIC18.2■□□□□ 0.5
VRK3Q8IV63 AC136944.6-201ENST00000634818 245 ntBASIC18.2■□□□□ 0.5
VRK3Q8IV63 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VRK3Q8IV63 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VRK3Q8IV63 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VRK3Q8IV63 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VRK3Q8IV63 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VRK3Q8IV63 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
VRK3Q8IV63 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 KRT18P23-201ENST00000435622 1283 ntBASIC18.19■□□□□ 0.5
VRK3Q8IV63 KRT18P57-201ENST00000443599 1254 ntBASIC18.19■□□□□ 0.5
VRK3Q8IV63 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.19■□□□□ 0.5
VRK3Q8IV63 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VRK3Q8IV63 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms