Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 BICD1-207ENST00000551848 1962 ntBASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 AL023284.2-201ENST00000405850 579 ntBASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
ZNF549Q6P9A3 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
ZNF549Q6P9A3 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.52■□□□□ 0.55
ZNF549Q6P9A3 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.52■□□□□ 0.55
ZNF549Q6P9A3 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ZNF549Q6P9A3 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
ZNF549Q6P9A3 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ZNF549Q6P9A3 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.52■□□□□ 0.55
ZNF549Q6P9A3 AC079598.2-202ENST00000546624 1451 ntBASIC18.52■□□□□ 0.55
ZNF549Q6P9A3 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 MIR718-201ENST00000390190 70 ntBASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 AP005242.2-201ENST00000580065 1175 ntBASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 AC007613.1-201ENST00000572811 2597 ntBASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.51■□□□□ 0.55
ZNF549Q6P9A3 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 KRT8P45-201ENST00000414328 1447 ntBASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 HCG11-201ENST00000411553 5696 ntBASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 SNORA78-201ENST00000459373 127 ntBASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 CA15P1-201ENST00000481698 905 ntBASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 MIR4674-201ENST00000582457 87 ntBASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF549Q6P9A3 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF549Q6P9A3 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms