Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.7■□□□□ 0.42
LIM2P55344 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.7■□□□□ 0.42
LIM2P55344 AL357033.4-201ENST00000617703 1807 ntBASIC17.7■□□□□ 0.42
LIM2P55344 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.7■□□□□ 0.42
LIM2P55344 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
LIM2P55344 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIM2P55344 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.69■□□□□ 0.42
LIM2P55344 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.69■□□□□ 0.42
LIM2P55344 Z98044.1-201ENST00000632503 1764 ntBASIC17.69■□□□□ 0.42
LIM2P55344 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIM2P55344 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.69■□□□□ 0.42
LIM2P55344 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIM2P55344 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIM2P55344 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.69■□□□□ 0.42
LIM2P55344 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIM2P55344 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.69■□□□□ 0.42
LIM2P55344 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.69■□□□□ 0.42
LIM2P55344 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.69■□□□□ 0.42
LIM2P55344 MIR3180-5-201ENST00000583743 153 ntBASIC17.69■□□□□ 0.42
LIM2P55344 CR769767.2-201ENST00000622735 460 ntBASIC17.69■□□□□ 0.42
LIM2P55344 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
LIM2P55344 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIM2P55344 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIM2P55344 AC036111.1-201ENST00000533973 1582 ntBASIC17.69■□□□□ 0.42
LIM2P55344 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.69■□□□□ 0.42
LIM2P55344 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIM2P55344 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.69■□□□□ 0.42
LIM2P55344 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIM2P55344 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
LIM2P55344 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIM2P55344 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIM2P55344 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIM2P55344 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.68■□□□□ 0.42
LIM2P55344 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LIM2P55344 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.68■□□□□ 0.42
LIM2P55344 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.68■□□□□ 0.42
LIM2P55344 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.68■□□□□ 0.42
LIM2P55344 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.68■□□□□ 0.42
LIM2P55344 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.68■□□□□ 0.42
LIM2P55344 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LIM2P55344 KRT8P45-201ENST00000414328 1447 ntBASIC17.68■□□□□ 0.42
LIM2P55344 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LIM2P55344 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.68■□□□□ 0.42
LIM2P55344 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.68■□□□□ 0.42
LIM2P55344 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.68■□□□□ 0.42
LIM2P55344 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.68■□□□□ 0.42
LIM2P55344 LINC01023-201ENST00000606054 436 ntBASIC17.68■□□□□ 0.42
LIM2P55344 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
LIM2P55344 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
LIM2P55344 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.68■□□□□ 0.42
LIM2P55344 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIM2P55344 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
LIM2P55344 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.67■□□□□ 0.42
LIM2P55344 ANO7L1-203ENST00000602586 1720 ntBASIC17.67■□□□□ 0.42
LIM2P55344 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LIM2P55344 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
LIM2P55344 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LIM2P55344 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 MIR564-202ENST00000385049 94 ntBASIC17.67■□□□□ 0.42
LIM2P55344 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
LIM2P55344 SLC25A3P1-201ENST00000443844 931 ntBASIC17.67■□□□□ 0.42
LIM2P55344 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.67■□□□□ 0.42
LIM2P55344 WWOX-216ENST00000569818 525 ntBASIC17.67■□□□□ 0.42
LIM2P55344 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.67■□□□□ 0.42
LIM2P55344 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.67■□□□□ 0.42
LIM2P55344 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
LIM2P55344 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
LIM2P55344 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
LIM2P55344 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIM2P55344 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms