Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH6P52701 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
MSH6P52701 KATNBL1P6-202ENST00000562413 1466 ntBASIC25.77■■□□□ 1.72
MSH6P52701 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC25.77■■□□□ 1.72
MSH6P52701 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
MSH6P52701 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
MSH6P52701 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
MSH6P52701 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
MSH6P52701 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC25.77■■□□□ 1.72
MSH6P52701 DNAJB3-202ENST00000449667 1266 ntBASIC25.77■■□□□ 1.72
MSH6P52701 GZMM-202ENST00000592501 941 ntTSL 3 BASIC25.77■■□□□ 1.72
MSH6P52701 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC25.77■■□□□ 1.72
MSH6P52701 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
MSH6P52701 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.72
MSH6P52701 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
MSH6P52701 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC25.76■■□□□ 1.71
MSH6P52701 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC25.76■■□□□ 1.71
MSH6P52701 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
MSH6P52701 MED16-201ENST00000269814 1199 ntTSL 5 BASIC25.76■■□□□ 1.71
MSH6P52701 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
MSH6P52701 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
MSH6P52701 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC25.76■■□□□ 1.71
MSH6P52701 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC25.76■■□□□ 1.71
MSH6P52701 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
MSH6P52701 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
MSH6P52701 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
MSH6P52701 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
MSH6P52701 AL512408.1-201ENST00000569378 2000 ntBASIC25.75■■□□□ 1.71
MSH6P52701 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
MSH6P52701 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
MSH6P52701 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
MSH6P52701 DDT-203ENST00000403754 569 ntTSL 3 BASIC25.75■■□□□ 1.71
MSH6P52701 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC25.75■■□□□ 1.71
MSH6P52701 AC021087.4-201ENST00000563761 564 ntBASIC25.75■■□□□ 1.71
MSH6P52701 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC25.75■■□□□ 1.71
MSH6P52701 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
MSH6P52701 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC25.75■■□□□ 1.71
MSH6P52701 HLA-J-201ENST00000462773 1622 ntBASIC25.75■■□□□ 1.71
MSH6P52701 AC006333.2-201ENST00000607957 2099 ntBASIC25.75■■□□□ 1.71
MSH6P52701 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
MSH6P52701 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
MSH6P52701 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
MSH6P52701 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
MSH6P52701 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
MSH6P52701 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC25.74■■□□□ 1.71
MSH6P52701 AC092910.1-201ENST00000482027 1129 ntBASIC25.74■■□□□ 1.71
MSH6P52701 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC25.74■■□□□ 1.71
MSH6P52701 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC25.74■■□□□ 1.71
MSH6P52701 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
MSH6P52701 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC25.74■■□□□ 1.71
MSH6P52701 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
MSH6P52701 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
MSH6P52701 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC25.73■■□□□ 1.71
MSH6P52701 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MSH6P52701 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
MSH6P52701 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
MSH6P52701 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
MSH6P52701 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC25.73■■□□□ 1.71
MSH6P52701 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
MSH6P52701 PMP22-202ENST00000395936 816 ntTSL 3 BASIC25.73■■□□□ 1.71
MSH6P52701 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC25.73■■□□□ 1.71
MSH6P52701 LBH-203ENST00000404397 543 ntTSL 4 BASIC25.73■■□□□ 1.71
MSH6P52701 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC25.73■■□□□ 1.71
MSH6P52701 AC004832.2-201ENST00000426397 482 ntBASIC25.73■■□□□ 1.71
MSH6P52701 RPS2P1-201ENST00000434010 821 ntBASIC25.73■■□□□ 1.71
MSH6P52701 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC25.73■■□□□ 1.71
MSH6P52701 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC25.73■■□□□ 1.71
MSH6P52701 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
MSH6P52701 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
MSH6P52701 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MSH6P52701 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MSH6P52701 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MSH6P52701 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC25.73■■□□□ 1.71
MSH6P52701 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
MSH6P52701 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC25.73■■□□□ 1.71
MSH6P52701 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MSH6P52701 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
MSH6P52701 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
MSH6P52701 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
MSH6P52701 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
MSH6P52701 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC25.72■■□□□ 1.71
MSH6P52701 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
MSH6P52701 COA5-202ENST00000409997 557 ntTSL 4 BASIC25.72■■□□□ 1.71
MSH6P52701 DDT-206ENST00000430101 573 ntTSL 2 BASIC25.72■■□□□ 1.71
MSH6P52701 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC25.72■■□□□ 1.71
MSH6P52701 HS6ST1P1-201ENST00000481504 1234 ntBASIC25.72■■□□□ 1.71
MSH6P52701 RNA5SP415-201ENST00000517246 115 ntBASIC25.72■■□□□ 1.71
MSH6P52701 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC25.72■■□□□ 1.71
MSH6P52701 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
MSH6P52701 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC25.72■■□□□ 1.71
MSH6P52701 AC005336.2-201ENST00000593183 939 ntBASIC25.72■■□□□ 1.71
MSH6P52701 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
MSH6P52701 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC25.72■■□□□ 1.71
MSH6P52701 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC25.72■■□□□ 1.71
MSH6P52701 TP73-AS1-210ENST00000637775 1455 ntBASIC25.72■■□□□ 1.71
MSH6P52701 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
MSH6P52701 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
MSH6P52701 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
MSH6P52701 AL162377.1-201ENST00000618844 1793 ntBASIC25.72■■□□□ 1.71
MSH6P52701 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms