Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NEK3P51956 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
NEK3P51956 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.23■□□□□ 0.67
NEK3P51956 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NEK3P51956 AC010331.1-201ENST00000611423 582 ntBASIC19.23■□□□□ 0.67
NEK3P51956 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NEK3P51956 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
NEK3P51956 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NEK3P51956 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.23■□□□□ 0.67
NEK3P51956 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.23■□□□□ 0.67
NEK3P51956 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NEK3P51956 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NEK3P51956 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.23■□□□□ 0.67
NEK3P51956 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
NEK3P51956 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
NEK3P51956 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NEK3P51956 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
NEK3P51956 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NEK3P51956 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.22■□□□□ 0.67
NEK3P51956 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.22■□□□□ 0.67
NEK3P51956 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
NEK3P51956 SDHAP1-207ENST00000440850 2000 ntBASIC19.22■□□□□ 0.67
NEK3P51956 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NEK3P51956 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NEK3P51956 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.22■□□□□ 0.67
NEK3P51956 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NEK3P51956 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.22■□□□□ 0.67
NEK3P51956 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NEK3P51956 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.22■□□□□ 0.67
NEK3P51956 HMGA1P5-201ENST00000412453 271 ntBASIC19.22■□□□□ 0.67
NEK3P51956 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.22■□□□□ 0.67
NEK3P51956 ATP5G1P1-201ENST00000448724 379 ntBASIC19.22■□□□□ 0.67
NEK3P51956 TSPY17P-201ENST00000450329 467 ntBASIC19.22■□□□□ 0.67
NEK3P51956 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.22■□□□□ 0.67
NEK3P51956 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.22■□□□□ 0.67
NEK3P51956 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.22■□□□□ 0.67
NEK3P51956 AC010653.2-201ENST00000623505 997 ntBASIC19.22■□□□□ 0.67
NEK3P51956 BICD1-207ENST00000551848 1962 ntBASIC19.22■□□□□ 0.67
NEK3P51956 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NEK3P51956 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
NEK3P51956 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
NEK3P51956 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NEK3P51956 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.22■□□□□ 0.67
NEK3P51956 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NEK3P51956 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.21■□□□□ 0.67
NEK3P51956 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NEK3P51956 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
NEK3P51956 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NEK3P51956 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NEK3P51956 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NEK3P51956 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NEK3P51956 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NEK3P51956 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
NEK3P51956 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
NEK3P51956 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NEK3P51956 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
NEK3P51956 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NEK3P51956 AC007663.1-201ENST00000438948 1240 ntBASIC19.21■□□□□ 0.67
NEK3P51956 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.21■□□□□ 0.67
NEK3P51956 AC010203.1-204ENST00000548782 407 ntBASIC19.21■□□□□ 0.67
NEK3P51956 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.21■□□□□ 0.67
NEK3P51956 AC092338.2-201ENST00000568827 1415 ntBASIC19.21■□□□□ 0.67
NEK3P51956 AC073508.3-201ENST00000619697 1419 ntBASIC19.21■□□□□ 0.67
NEK3P51956 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
NEK3P51956 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
NEK3P51956 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NEK3P51956 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
NEK3P51956 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
NEK3P51956 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
NEK3P51956 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 AL023803.3-201ENST00000615559 522 ntBASIC19.2■□□□□ 0.66
NEK3P51956 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
NEK3P51956 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 AL354751.1-201ENST00000412768 1863 ntBASIC19.2■□□□□ 0.66
NEK3P51956 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.2■□□□□ 0.66
NEK3P51956 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NEK3P51956 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NEK3P51956 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NEK3P51956 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.19■□□□□ 0.66
NEK3P51956 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.19■□□□□ 0.66
NEK3P51956 FZD10-202ENST00000539839 3282 ntBASIC19.19■□□□□ 0.66
NEK3P51956 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
NEK3P51956 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.19■□□□□ 0.66
NEK3P51956 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.19■□□□□ 0.66
NEK3P51956 TSPY21P-201ENST00000433481 731 ntBASIC19.19■□□□□ 0.66
NEK3P51956 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.19■□□□□ 0.66
NEK3P51956 AL353719.1-201ENST00000566847 864 ntBASIC19.19■□□□□ 0.66
NEK3P51956 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms